PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010549212.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ERF
Protein Properties Length: 275aa    MW: 30480.8 Da    PI: 6.9064
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010549212.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.79.4e-1683133155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                     ++ykGVr+++ +g+W+AeI+dp     +   r +lg+f tae Aa+a+ +a+  le+
  XP_010549212.1  83 KKYKGVRRRP-SGKWAAEIWDP-----QarVRRWLGTFPTAEIAARAYNEAASVLEK 133
                     59********.7*********9.....445999******************988876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.24E-2383136No hitNo description
Gene3DG3DSA:3.30.730.105.4E-2184132IPR001471AP2/ERF domain
PROSITE profilePS5103219.42784145IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-1584131IPR016177DNA-binding domain
PfamPF008474.5E-984133IPR001471AP2/ERF domain
SMARTSM003801.5E-1884146IPR001471AP2/ERF domain
PRINTSPR003671.0E-78596IPR001471AP2/ERF domain
PRINTSPR003671.0E-7107123IPR001471AP2/ERF domain
PfamPF139619.1E-8191217IPR025314Domain of unknown function DUF4219
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MGSSASPSPM TRDQEHEIIV SALRKVISAE TTGGDTSAPI FTAGEMFPVP DHGPCPLCHA  60
HCYGSCAFGP QYVIRRRTCE KMKKYKGVRR RPSGKWAAEI WDPQARVRRW LGTFPTAEIA  120
ARAYNEAASV LEKRGRGRQP EMNGGGRGGG DEEDLWSEIF DEEEMRSLLG MESPEVAITA  180
GVGVTLPVPV FDGENYQVWF VKMKAFLKGS DLWEAVEEDY EVTPLGANPT SNQIKLYKER  240
MASKAKAMSC IFSAVLPSIF TKIMGLQYAK EMWIS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17591RRTCEKMKKYKGVRRRP
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00594DAPTransfer from AT5G67000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010549212.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019058861.11e-126PREDICTED: putative ethylene-responsive transcription factor ERF121
SwissprotQ38Q403e-38EF122_ARATH; Ethylene-responsive transcription factor ERF122
STRINGXP_010549212.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67010.18e-36ERF family protein