PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010549292.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family SBP
Protein Properties Length: 434aa    MW: 48140.9 Da    PI: 6.9979
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010549292.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP132.31.6e-41165241278
                     -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     CqvegC+ dls+ak+yhr+hkvCe hsk+p v+v gle+rfCqqCsrfh lsefDe+krsCrrrL +hn+rrrk+q+
  XP_010549292.1 165 CQVEGCNLDLSSAKNYHRKHKVCESHSKCPLVIVGGLERRFCQQCSRFHGLSEFDEKKRSCRRRLTDHNARRRKPQP 241
                     **************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.105.7E-33158226IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.624162239IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.96E-39163245IPR004333Transcription factor, SBP-box
PfamPF031102.8E-31165238IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MECNLKSSVQ WEWENLISLG PSMTEVPRKL RHSEWEIDGL DYVSLCSPGF GGLGSGGLGS  60
DIGHAFSTSS KSTSISSSST DMRTYNLTSE ANEDLCSNEE LAKRISTSPW SLKASIEPIL  120
GLKLGKRTYF EDVCAENDGK GLVSPSESPV KRSKSISQSL QAPHCQVEGC NLDLSSAKNY  180
HRKHKVCESH SKCPLVIVGG LERRFCQQCS RFHGLSEFDE KKRSCRRRLT DHNARRRKPQ  240
PEYMQLNHGL KYDGKRQMDF VWNKFALVDA RSDDKFIWEA MPGSKSMTPR ESVAKPAKAE  300
SFDGRILSND NKLLSSATIQ DSGGTWFSPL NTKMETSEFF SKDIGEITIS SHMDGSRDLD  360
GALSLLSNAT YPVSNLVTAS HHLVSHQLDS SFNNFQTDLQ VVDGPTAPHR DIGSPFQLLS  420
GQSSESCFCL NQFN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-271652381184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1220237KKRSCRRRLTDHNARRRK
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010549292.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156 and miR157 (Probable). Up-regulated by Turnip mosaic virus P1/HC-Pro protein, that acts as an antagonist of miR156. {ECO:0000269|PubMed:12202040, ECO:0000269|PubMed:12586064, ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010549292.10.0PREDICTED: squamosa promoter-binding-like protein 2
RefseqXP_010549293.10.0PREDICTED: squamosa promoter-binding-like protein 2
RefseqXP_010549294.10.0PREDICTED: squamosa promoter-binding-like protein 2
RefseqXP_019058869.10.0PREDICTED: squamosa promoter-binding-like protein 2
SwissprotQ9S8401e-129SPL2_ARATH; Squamosa promoter-binding-like protein 2
TrEMBLE4MXD41e-132E4MXD4_EUTHA; mRNA, clone: RTFL01-38-E06
TrEMBLV4LXV81e-132V4LXV8_EUTSA; Uncharacterized protein
STRINGXP_010549292.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65622644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.31e-121squamosa promoter binding protein-like 2