PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010549297.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family NAC
Protein Properties Length: 254aa    MW: 28997.8 Da    PI: 9.5209
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010549297.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM159.21.7e-49161411128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     l pGfrFhPtd+el+veyLk+kv+g +l++ +vi+e+di+k++PwdLp  +    +e yfFs+r+ ky++g+r+nrat sgyWkatg dk++++ 
  XP_010549297.1  16 LLPGFRFHPTDQELIVEYLKRKVTGLPLPA-SVISETDICKSDPWDLPGDL---GSERYFFSTREAKYPNGNRSNRATGSGYWKATGIDKRIIAG 106
                     579***************************.99***************554...5699**********************************997 PP

             NAM  96 ..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       ++++ g+kktLvfy+g+ p+g++tdW++heyrl
  XP_010549297.1 107 srGNKVLGMKKTLVFYRGKPPNGTRTDWILHEYRL 141
                     767888***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.45E-5713175IPR003441NAC domain
PROSITE profilePS5100555.71416175IPR003441NAC domain
PfamPF023653.0E-2518141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MEKPDCVRVK NKVLKLLPGF RFHPTDQELI VEYLKRKVTG LPLPASVISE TDICKSDPWD  60
LPGDLGSERY FFSTREAKYP NGNRSNRATG SGYWKATGID KRIIAGSRGN KVLGMKKTLV  120
FYRGKPPNGT RTDWILHEYR LVDDTSHDMD ASSTHNPQER RARGESWVLC RIFLKKRNKE  180
TEEEKSEGRE RNLEKKSPLL FYDFMKREKT CDLNLSPSSP SACSSGVTET TSSSSSDDEQ  240
TSCRKSDNRI VFFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-491418513174Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010549297.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010549297.10.0PREDICTED: NAC domain-containing protein 83-like isoform X1
SwissprotQ9FY931e-89NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A0F6V0F52e-99A0A0F6V0F5_POPTO; Apical meristem (NAM) family protein
STRINGXP_010549297.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18062786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.16e-83NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]