PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010549348.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ERF
Protein Properties Length: 168aa    MW: 18086.7 Da    PI: 10.1695
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010549348.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.11.1e-181362255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    +y+GVr ++ +gr++AeIrdps+   ++r +lg+f+t+e+Aa a++ a+++l+g
  XP_010549348.1 13 HYRGVRKRP-WGRYAAEIRDPSK---KTRLWLGTFDTPEQAALAYDGAARYLRG 62
                    7********.**********965...6*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.3E-351376IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-211371IPR016177DNA-binding domain
PfamPF008475.4E-131362IPR001471AP2/ERF domain
CDDcd000182.08E-281370No hitNo description
Gene3DG3DSA:3.30.730.103.4E-311370IPR001471AP2/ERF domain
PROSITE profilePS5103222.7081370IPR001471AP2/ERF domain
PRINTSPR003671.6E-101425IPR001471AP2/ERF domain
PRINTSPR003671.6E-103652IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MASSSSSCAR EVHYRGVRKR PWGRYAAEIR DPSKKTRLWL GTFDTPEQAA LAYDGAARYL  60
RGIRAKTNFP SPLSLDLNYY SSAATAGNNH RPFWISGVPP PPPPPRPIPL AGEFLRTGLL  120
LEQAPAVSAA LVSPGCSVVE FPAVGSSVPA GGRRGLPIDL NEPPPLWL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-21970163ATERF1
3gcc_A2e-21970163ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00645PBMTransfer from LOC_Os05g41760Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010549348.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010549348.11e-117PREDICTED: ethylene-responsive transcription factor 12
SwissprotQ94ID64e-58ERF81_ARATH; Ethylene-responsive transcription factor 12
TrEMBLA0A3P6EN522e-59A0A3P6EN52_BRAOL; Uncharacterized protein
STRINGXP_010549348.11e-117(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.12e-61ERF domain protein 12