PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010549363.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family NAC
Protein Properties Length: 311aa    MW: 35191.5 Da    PI: 9.2997
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010549363.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM107.81.3e-33752161128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee...vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk...... 79 
                     lp+G+rF+P+d e++  +L++kv+++k      ++  e   +++   +i++++P++Lp  v+++ +  +fF++ +k+y+tg+rk+r+++      
  XP_010549363.1  75 LPAGVRFDPSDREIL-MHLEAKVSSDKrklhplID--EfipTLEGEnGICYTHPEKLP-GVRKDGQVRHFFHRPSKAYTTGTRKRRKVStdergh 165
                     799***********9.89*****999956644322..22222333336**********.666777888******************733345444 PP

             NAM  80 sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                     + +W++tgk+++v s +g+l+g kk+Lv+y   gr++k+ekt+Wvmh+y+l
  XP_010549363.1 166 ETRWHKTGKTRPVSSGQGSLKGFKKILVLYtnYGRQRKPEKTSWVMHQYHL 216
                     788***************************66589**************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-3666235IPR003441NAC domain
PROSITE profilePS5100533.38875235IPR003441NAC domain
PfamPF023651.5E-1476216IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MNWSDGSEDN YDLDLERAIS IDHPLMVASK FRSQSRITVG PNTGKSHNTI TCPSCGHKIH  60
RQQDQVGIIK DLPSLPAGVR FDPSDREILM HLEAKVSSDK RKLHPLIDEF IPTLEGENGI  120
CYTHPEKLPG VRKDGQVRHF FHRPSKAYTT GTRKRRKVST DERGHETRWH KTGKTRPVSS  180
GQGSLKGFKK ILVLYTNYGR QRKPEKTSWV MHQYHLGHSE DEKDGELVLS KVFYQTQPRQ  240
CGSSMEAKTK GFAPVDPRNY SEIDGLGFED GGQEGNNREI DQRQVIHELV VREGDGSCSL  300
LRFTSDASKG K
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers. Is a direct target of SND1. {ECO:0000269|PubMed:18952777}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00165DAPTransfer from AT1G28470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010549363.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010549363.10.0PREDICTED: NAC domain-containing protein 10
SwissprotF4HY611e-160NAC10_ARATH; NAC domain-containing protein 10
TrEMBLV4K8S21e-161V4K8S2_EUTSA; Uncharacterized protein
STRINGXP_010549363.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20122881
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28470.11e-162NAC domain containing protein 10