PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010549420.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

WRKY

Protein Properties

Length: 249aa MW: 28133.8 Da PI: 5.2842

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010549420.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.8	1.4e-30	71	129	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+ver+++dp+++ +tY+ eHnh+ XP_010549420.1 71 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERNRDDPTMILVTYTCEHNHP 129 69***********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	4.7E-32	62	131	IPR003657	WRKY domain
PROSITE profile	PS50811	32.592	65	131	IPR003657	WRKY domain
SuperFamily	SSF118290	8.89E-27	66	131	IPR003657	WRKY domain
SMART	SM00774	3.7E-35	70	130	IPR003657	WRKY domain
Pfam	PF03106	4.0E-26	72	129	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MKRALEMERS SFSESSQETG PGSPTSSIFN DMKLISSPSP KRRRSVQKRL VTVPIKDVEG 60 SRMKGETAPP SDSWAWRKYG QKPIKGSPYP RGYYRCSSSK GCPARKQVER NRDDPTMILV 120 TYTCEHNHPW PASKTGPIKH RPKPEPEPEP EIVPELELEP EQSKFMDLGE IGTTPSCVDE 180 FAWFGEMETT SSTILESPIF SSDKKTVPPP ENADVAMFFP MREEDESLFA DLGELPECSA 240 VFRRPLEIY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	9e-20	48	131	6	79	Disease resistance protein RRS1
5w3x_D	9e-20	48	131	6	79	Disease resistance protein RRS1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00167	DAP	Transfer from AT1G29280	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010549420.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010549420.1	0.0	PREDICTED: probable WRKY transcription factor 65 isoform X2
Swissprot	Q9LP56	1e-111	WRK65_ARATH; Probable WRKY transcription factor 65
TrEMBL	A0A178W6S1	1e-110	A0A178W6S1_ARATH; WRKY65
STRING	XP_010549419.1	1e-166	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29280.1	1e-114	WRKY DNA-binding protein 65

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Singh V,Roy S,Singh D,Nandi AK Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes. J. Biosci., 2014. 39(1): p. 119-26 [PMID:24499796]