PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010549473.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 236aa    MW: 27073.1 Da    PI: 5.068
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010549473.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.41.7e-05181220954
                     HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     Er+RR ++++ +  Lr+++P       + ++ + iL +Av+Y+ksL
  XP_010549473.1 181 ERKRR-KMKKMMKVLRRIVPGG-----EQMNTVCILDEAVQYLKSL 220
                     56665.8*************95.....68***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.36171220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.6E-4178226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.9E-9181227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.4E-8181227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MQKNLHFRRM ARETHFPDEM GDSDMHIPYA STAFDAVFPP CVKLKPFNGV ELQPSPVCPK  60
NFIIFDQTYD RSHVMYHPEM TRKLSSPALN AFANSYQNEH ARECYNNYDQ EASSSFKEDS  120
AEIDALLSCN DYDDEEEDSK EYDAEEVSTA RNSENHGNLS PESSFSSYDC SNIPRKQQNG  180
ERKRRKMKKM MKVLRRIVPG GEQMNTVCIL DEAVQYLKSL KVEAQKLGVG NFPDEA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174188RKQQNGERKRRKMKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010549473.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010549475.21e-178PREDICTED: transcription factor bHLH144-like
SwissprotQ9ASX92e-76BH144_ARATH; Transcription factor bHLH144
TrEMBLD7KEN42e-77D7KEN4_ARALL; Uncharacterized protein
STRINGXP_010549473.11e-178(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61951626
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29950.23e-75bHLH family protein
Publications ? help Back to Top
  1. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]
  2. Cai Q, et al.
    The SAC51 Family Plays a Central Role in Thermospermine Responses in Arabidopsis.
    Plant Cell Physiol., 2016. 57(8): p. 1583-92
    [PMID:27388339]
  3. Yamamoto M,Takahashi T
    Thermospermine enhances translation of SAC51 and SACL1 in Arabidopsis.
    Plant Signal Behav, 2017. 12(1): p. e1276685
    [PMID:28045577]