PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010549481.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

M-type_MADS

Protein Properties

Length: 153aa MW: 17846.2 Da PI: 4.5827

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010549481.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	46.7	4.2e-15	14	56	1	43
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 k++en+ r +tfskRr gi+KK +EL + Cdaev ++fs+t XP_010549481.1 14 KKVENEEDRMITFSKRRSGIFKKINELVTSCDAEVGFLVFSQT 56 678**************************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	20.647	6	58	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.9E-15	6	67	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	5.1E-18	7	58	IPR002100	Transcription factor, MADS-box
CDD	cd00120	1.85E-21	7	56	No hit	No description
PRINTS	PR00404	1.4E-12	8	28	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	6.4E-18	15	56	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.4E-12	28	43	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.4E-12	43	64	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 153 aa Download sequence Send to blast
MVKTTKGKQK IDMKKVENEE DRMITFSKRR SGIFKKINEL VTSCDAEVGF LVFSQTPRDN 60 AQIVGEAYRK QRIEELSETY EKLAEEVEEE KEKQKALEDL VEEKKLDTFW WKTPIEGMNE 120 DDRTLVHDTF VELHDGLCDL LAERLRLASD DSA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010549481.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010549481.1	1e-108	PREDICTED: agamous-like MADS-box protein AGL61 isoform X2
TrEMBL	A0A178VEK2	2e-36	A0A178VEK2_ARATH; AGL57
TrEMBL	Q9M8W6	1e-36	Q9M8W6_ARATH; AGAMOUS-like 57
STRING	XP_010549480.1	9e-88	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04100.1	5e-35	AGAMOUS-like 57