PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010549548.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

M-type_MADS

Protein Properties

Length: 169aa MW: 19588 Da PI: 4.6029

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010549548.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	34.2	3.4e-11	2	45	1	44
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 k+ien + tfskRr gi KK + L v Cdae+ ++f + + XP_010549548.1 2 KKIENVEDKLSTFSKRRSGIYKKSNDLIVTCDAEIGFLMFTEAD 45 6899**********************************998865 PP
2	HLH	13.2	0.00017	78	113	5	41
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-.STCH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskK.lsKa 41 + +rE+ R dr+N+ +e+L + l + +K l+K XP_010549548.1 78 ADAREKERIDRMNEEYENLLDELEGeR---ERRKaLEKL 113 568****************99988855...555557775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	1.27E-16	1	76	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	18.306	1	54	IPR002100	Transcription factor, MADS-box
SMART	SM00432	3.7E-8	1	53	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.5E-14	3	50	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.9E-5	16	31	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.9E-5	31	52	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence Send to blast
MKKIENVEDK LSTFSKRRSG IYKKSNDLIV TCDAEIGFLM FTEADTPFSF GHPSIETVSD 60 KLRNPLPPHT KNASSSLADA REKERIDRMN EEYENLLDEL EGERERRKAL EKLSEEKKIE 120 ECWFKAPVEK LNGDEIQLMH DTFLEFHEAL CDELFNRLSI NDEGTSSIQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010549548.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010549548.1	1e-121	PREDICTED: agamous-like MADS-box protein AGL62
STRING	XP_010549548.1	1e-121	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM86	28	390

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04100.1	3e-30	AGAMOUS-like 57