PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010549549.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family M-type_MADS
Protein Properties Length: 182aa    MW: 20832.6 Da    PI: 5.0709
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010549549.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF31.81.8e-101558144
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                    k+ien   +  tfskRr gi KK + L v Cdae+  ++f + +
  XP_010549549.1 15 KKIENVEDKLSTFSKRRSGIYKKFNDLIVACDAEIGFLMFTEAD 58
                    6899**********************************998865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006619.946767IPR002100Transcription factor, MADS-box
SMARTSM004322.0E-15766IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-18884IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-11929IPR002100Transcription factor, MADS-box
PfamPF003196.7E-141663IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-112944IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-114465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MAGKTTKGKQ KIPMKKIENV EDKLSTFSKR RSGIYKKFND LIVACDAEIG FLMFTEADTP  60
FSFGHPSIET VSDKLRNPLP PRAKNDSGSL VDAREKESID RMNEEYENLL DELEGERERR  120
KALEKLSEEK KIEECWFKAS VEKLNGDEIQ LMHGTFLKLH EALCDELFNR LSVNDEGTSS  180
IQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010549549.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010549549.11e-131PREDICTED: agamous-like MADS-box protein AGL62
STRINGXP_010549549.11e-131(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04100.12e-35AGAMOUS-like 57