PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010549567.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family M-type_MADS
Protein Properties Length: 205aa    MW: 22996.2 Da    PI: 9.3438
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010549567.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF50.13.5e-161663249
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    +i  k  r +tfskR+ gi KK  ELS+LC+a++a ++fs  g+ +++
  XP_010549567.1 16 KIVKKNDRMITFSKRKSGIYKKIIELSTLCGADIAFLVFSAAGNPFTF 63
                    6778899************************************98888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006622.876767IPR002100Transcription factor, MADS-box
SMARTSM004322.5E-22766IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.55E-23876IPR002100Transcription factor, MADS-box
PRINTSPR004048.4E-17929IPR002100Transcription factor, MADS-box
PfamPF003194.3E-191663IPR002100Transcription factor, MADS-box
PRINTSPR004048.4E-172944IPR002100Transcription factor, MADS-box
PRINTSPR004048.4E-174465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MTMKKTKGRQ KIDIKKIVKK NDRMITFSKR KSGIYKKIIE LSTLCGADIA FLVFSAAGNP  60
FTFGSPSFEA VVERFGEGGG GGGGGDGSRK DDDSSPFQRT ILDAHKKIRL NELSKQYTSL  120
VDELDAEKER MKTLPTPAPV VETKEWWRIE PAEIPNDEIL GQLLYKFEDL YENLRNIMEQ  180
RIREGFPSSS SSNMNVQGFG NGHII
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010549567.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010549567.11e-150PREDICTED: agamous-like MADS-box protein AGL29
STRINGXP_010549567.11e-150(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46761352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29962.17e-43AGAMOUS-like 64