PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010549657.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

G2-like

Protein Properties

Length: 461aa MW: 51365.9 Da PI: 5.5061

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010549657.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.3	8.5e-34	250	304	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWtpeLHe+Fveav+qLGGse+AtPk++l+lm+ +gLt++hvkSHLQkYR+ XP_010549657.1 250 KQRMRWTPELHESFVEAVNQLGGSERATPKAVLKLMNNPGLTIYHVKSHLQKYRT 304 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	8.96E-18	249	304	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.4E-31	250	306	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.3E-24	250	304	IPR006447	Myb domain, plants
Pfam	PF00249	5.7E-11	252	303	IPR001005	SANT/Myb domain
Pfam	PF14379	1.7E-23	341	386	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 461 aa Download sequence Send to blast
MTLASNFGFS AAMSSFFPAL PTTLEERYNK LPYSFWVPSV QEPMNNPVPC QASPLVSGGD 60 SGGRLFSPSS GFCSGMHVSS VSSHERNSQT QPSVSTMPRE RALSRVAGEG QIQDCPLEIQ 120 SQSLISHSQE QKDMPWCADP MQGFFDFPDH VPIQNPPAES SRGMVSSEDL HKKSEWQEWA 180 DHLISVDDGL EPNWSELLGD PSLQNHDSKI SPQSSDIPRE EVKIKQHQTV VSSGEQFSGK 240 NSSSSAPPLK QRMRWTPELH ESFVEAVNQL GGSERATPKA VLKLMNNPGL TIYHVKSHLQ 300 KYRTARYKPE SSEGTEGEPS EKKLTSIEDI KSLDLKTSIG ITEALRLQME VQKRLHEQLE 360 IQRKLQLQIE EQGRYLQKMF EKQQKMQDNQ NKGPNPDDDD DDPSAPLQDQ SSPSPKKSDS 420 SGSQPRQDNV ASRKEKKGDG FSSADEDRSS SSPSKKRARE D

Sequence ? help Back to Top

Protein Sequence Length: 461 aa Download sequence Send to blast

MTLASNFGFS AAMSSFFPAL PTTLEERYNK LPYSFWVPSV QEPMNNPVPC QASPLVSGGD  60
SGGRLFSPSS GFCSGMHVSS VSSHERNSQT QPSVSTMPRE RALSRVAGEG QIQDCPLEIQ  120
SQSLISHSQE QKDMPWCADP MQGFFDFPDH VPIQNPPAES SRGMVSSEDL HKKSEWQEWA  180
DHLISVDDGL EPNWSELLGD PSLQNHDSKI SPQSSDIPRE EVKIKQHQTV VSSGEQFSGK  240
NSSSSAPPLK QRMRWTPELH ESFVEAVNQL GGSERATPKA VLKLMNNPGL TIYHVKSHLQ  300
KYRTARYKPE SSEGTEGEPS EKKLTSIEDI KSLDLKTSIG ITEALRLQME VQKRLHEQLE  360
IQRKLQLQIE EQGRYLQKMF EKQQKMQDNQ NKGPNPDDDD DDPSAPLQDQ SSPSPKKSDS  420
SGSQPRQDNV ASRKEKKGDG FSSADEDRSS SSPSKKRARE D

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	3e-28	250	308	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	3e-28	250	308	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	3e-28	250	308	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	3e-28	250	308	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	3e-28	250	308	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	3e-28	250	308	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	3e-28	250	308	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	3e-28	250	308	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor acting as central integrator of phosphate starvation responses (PubMed:20838596). Regulates FER1 expression upon phosphate starvation, linking iron and phosphate homeostasis (PubMed:23788639). {ECO:0000269\|PubMed:20838596, ECO:0000269\|PubMed:23788639}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00532	DAP	Transfer from AT5G29000	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010549657.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not up-regulated by Pi starvation. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010549657.1	0.0	PREDICTED: protein PHR1-LIKE 1 isoform X1
Swissprot	Q8GUN5	1e-179	PHL1_ARATH; Protein PHR1-LIKE 1
TrEMBL	A0A178ULC5	1e-177	A0A178ULC5_ARATH; PHL1
STRING	XP_010549657.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM856	27	117

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G29000.2	1e-165	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Bonnot C, et al. A chemical genetic strategy identify the PHOSTIN, a synthetic molecule that triggers phosphate starvation responses in Arabidopsis thaliana. New Phytol., 2016. 209(1): p. 161-76 [PMID:26243630] Aleksza D,Horváth GV,Sándor G,Szabados L Proline Accumulation Is Regulated by Transcription Factors Associated with Phosphate Starvation. Plant Physiol., 2017. 175(1): p. 555-567 [PMID:28765275]