PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010549771.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family AP2
Protein Properties Length: 593aa    MW: 64743 Da    PI: 5.9761
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010549771.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.71.9e-15213272155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++gr++A+++d  s+  g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  XP_010549771.1 213 SIYRGVTRHRWTGRYEAHLWDnSSKrEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 272
                     57*******************666675578446*************************98 PP
2AP245.91.4e-14317366355
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ +++g
  XP_010549771.1 317 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIRFRG 366
                     9***************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.5E-12213272IPR001471AP2/ERF domain
SuperFamilySSF541715.89E-17213281IPR016177DNA-binding domain
CDDcd000182.83E-21213281No hitNo description
SMARTSM003802.2E-28214286IPR001471AP2/ERF domain
PROSITE profilePS5103219.164214280IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-15214280IPR001471AP2/ERF domain
PRINTSPR003674.9E-6215226IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-17315375IPR016177DNA-binding domain
CDDcd000183.42E-23315374No hitNo description
SMARTSM003803.7E-32316380IPR001471AP2/ERF domain
PROSITE profilePS5103219.164316374IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.4E-18316374IPR001471AP2/ERF domain
PfamPF008471.9E-9317366IPR001471AP2/ERF domain
PRINTSPR003674.9E-6356376IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 593 aa     Download sequence    Send to blast
MTHMNNWLGF SSLSPRDDDQ DQTHRGHGFS SAVDVPGDCF DLAADESSAA VAVPAIPSPF  60
ALLDPFTRDN NSHSREWNIN GGACNSQNGP KLENFFGLNQ TAVYDSININ EDNAINYGNC  120
GGGGGSFGLS MVKTWLRDQP ANYAENNVDG HGGARGLSLS MSSSSDNKNN NTDNDMKHDS  180
CDSAVQEKTL SETTVGLEAV PRKAVDSFGQ RTSIYRGVTR HRWTGRYEAH LWDNSSKREG  240
QTRKGRQVYL GGYDKEEKAA RAYDLAALKY WGTTTTTNFP IGDYEKEIEE MKHMTRQEYV  300
ASLRRKSSGF SRGASMYRGV TRHHQHGRWQ ARIGRVAGNK DLYLGTFSTQ EEAAEAYDIA  360
AIRFRGLNAV TNFDMNRYNV KAILESPTLP IGSASKRLRE STTEQMTIAS TVSDEESSLN  420
TASGVNNLWP SISFHLPNQG QLLSSSLPRY DVGIGQGRDW CHQEQDSELK PSHGFQHFFD  480
SSPSLVMGSS DSVTICGRED GFGGYQGAGY GGRNSGFVVP MATSVLSNEN VMINGSVYSV  540
PDVTCDARNA YCLAQQAASS ERDLPMGVPN VAAVGSNMYS GGASSTFTVW RDT
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00610ChIP-seqTransfer from AT5G17430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010549771.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010549771.10.0PREDICTED: AP2-like ethylene-responsive transcription factor BBM2
SwissprotQ8LSN20.0BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2
TrEMBLD7LX050.0D7LX05_ARALL; Predicted protein
STRINGXP_010549771.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86552737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.11e-173AP2 family protein