PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010549797.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

NAC

Protein Properties

Length: 484aa MW: 55851 Da PI: 4.8795

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010549797.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	177.2	4.5e-55	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhPtdeel+++yLk+k++g+++el e+i+evd+yk+ePwdLp k + ++++ewyfFs+rd+ky++g+r+nratk gyWkatgkd++v XP_010549797.1 6 LPPGFRFHPTDEELITYYLKRKINGREIEL-EIIPEVDLYKCEPWDLPgKtLLPSKDQEWYFFSPRDRKYPNGSRTNRATKGGYWKATGKDRRVS 99 79**************************.99***********6335566899********************************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++++g+kktLv+y+grap+g +t Wvmheyrl XP_010549797.1 100 W-RDRAIGTKKTLVYYRGRAPHGIRTGWVMHEYRL 133 9.8899*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.18E-63	4	157	IPR003441	NAC domain
PROSITE profile	PS51005	61.367	6	157	IPR003441	NAC domain
Pfam	PF02365	4.2E-29	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0090602	Biological Process	sieve element enucleation
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 484 aa Download sequence Send to blast
MAPVSLPPGF RFHPTDEELI TYYLKRKING REIELEIIPE VDLYKCEPWD LPGKTLLPSK 60 DQEWYFFSPR DRKYPNGSRT NRATKGGYWK ATGKDRRVSW RDRAIGTKKT LVYYRGRAPH 120 GIRTGWVMHE YRLDETECEH PASGLQDAYA LCRVFKKALI EGKPRELNSY VHKSPMSGIC 180 SSNLEVCSDL ESSTHQIQPY RTGQGQFCDE RFNPVDVGGV RDEDWARYLS NDMFAFPNYG 240 SSHAPSYPPP SKVNTELECA MLRHQTSLPP LRIENSPQEN DYFKTNQNNN GFEDFTFAAS 300 NSNLYNNDPF IPVGNLDHSS GWMRMPNNDF NQGFIVEHNI VPDFDDNKER DLEFGGESRN 360 NTVNNIEIDD YLSFEIYNED RVGEADEEGI NTDETLNSSG FRVVEEIRVS HGMFIATRQE 420 SETVFHQIVP SETLKVQINP FDDYLEEMTS FGDGSESFLD KIKTKLTEIN LIAHQYYKTI 480 RVFF

Sequence ? help Back to Top

Protein Sequence Length: 484 aa Download sequence Send to blast

MAPVSLPPGF RFHPTDEELI TYYLKRKING REIELEIIPE VDLYKCEPWD LPGKTLLPSK  60
DQEWYFFSPR DRKYPNGSRT NRATKGGYWK ATGKDRRVSW RDRAIGTKKT LVYYRGRAPH  120
GIRTGWVMHE YRLDETECEH PASGLQDAYA LCRVFKKALI EGKPRELNSY VHKSPMSGIC  180
SSNLEVCSDL ESSTHQIQPY RTGQGQFCDE RFNPVDVGGV RDEDWARYLS NDMFAFPNYG  240
SSHAPSYPPP SKVNTELECA MLRHQTSLPP LRIENSPQEN DYFKTNQNNN GFEDFTFAAS  300
NSNLYNNDPF IPVGNLDHSS GWMRMPNNDF NQGFIVEHNI VPDFDDNKER DLEFGGESRN  360
NTVNNIEIDD YLSFEIYNED RVGEADEEGI NTDETLNSSG FRVVEEIRVS HGMFIATRQE  420
SETVFHQIVP SETLKVQINP FDDYLEEMTS FGDGSESFLD KIKTKLTEIN LIAHQYYKTI  480
RVFF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-54	1	157	12	165	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-54	1	157	12	165	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-54	1	157	12	165	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-54	1	157	12	165	NO APICAL MERISTEM PROTEIN
3swm_A	1e-54	1	157	15	168	NAC domain-containing protein 19
3swm_B	1e-54	1	157	15	168	NAC domain-containing protein 19
3swm_C	1e-54	1	157	15	168	NAC domain-containing protein 19
3swm_D	1e-54	1	157	15	168	NAC domain-containing protein 19
3swp_A	1e-54	1	157	15	168	NAC domain-containing protein 19
3swp_B	1e-54	1	157	15	168	NAC domain-containing protein 19
3swp_C	1e-54	1	157	15	168	NAC domain-containing protein 19
3swp_D	1e-54	1	157	15	168	NAC domain-containing protein 19
4dul_A	1e-54	1	157	12	165	NAC domain-containing protein 19
4dul_B	1e-54	1	157	12	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC086, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00329	DAP	Transfer from AT3G03200	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010549797.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Regulated by the transcription factor APL (AC Q9SAK5). {ECO:0000269\|PubMed:25081480}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010549797.1	0.0	PREDICTED: NAC domain-containing protein 45 isoform X2
Swissprot	A4VCM0	0.0	NAC45_ARATH; NAC domain-containing protein 45
TrEMBL	V4N7S3	0.0	V4N7S3_EUTSA; Uncharacterized protein
STRING	XP_010549796.1	0.0	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03200.1	0.0	NAC domain containing protein 45

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]