PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010549959.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bZIP
Protein Properties Length: 183aa    MW: 21351.6 Da    PI: 6.2355
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010549959.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_146.57.7e-1583135557
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 
                     +++rr+++NRe+ArrsR RK+  ++eL   v+ L +eN++L+++l++ ++  +
  XP_010549959.1  83 RKQRRMISNRESARRSRMRKQRHLDELLSQVAWLRNENHQLINKLNQVSESHD 135
                     689******************************************99988655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.0E-1479143IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.82981144IPR004827Basic-leucine zipper domain
PfamPF001707.5E-1383139IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.01E-1383132No hitNo description
Gene3DG3DSA:1.20.5.1701.2E-1183155No hitNo description
CDDcd147021.16E-1884135No hitNo description
PROSITE patternPS00036086101IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MQPSDASELY YLVPSSSSPH SAYLSTISNN NMQEFHLNQY LNPSCNFSFN PQVQELNLQS  60
PCFSNNSTSD EADEQQLSII NERKQRRMIS NRESARRSRM RKQRHLDELL SQVAWLRNEN  120
HQLINKLNQV SESHDCVLQE NAQLKEETSE LRQLVTTMKL RSQYSCLEDF PCNMTHPRTE  180
PSN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
195102RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010549959.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4159200.0DQ415920.1 Cleome spinosa clone BAC Cs3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019058947.11e-131PREDICTED: basic leucine zipper 43
RefseqXP_019058948.11e-131PREDICTED: basic leucine zipper 43
RefseqXP_019058949.11e-131PREDICTED: basic leucine zipper 43
SwissprotQ9FMC24e-44BZP43_ARATH; Basic leucine zipper 43
TrEMBLQ1KUX81e-130Q1KUX8_9ROSI; Uncharacterized protein
STRINGXP_010549959.11e-130(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31122667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15830.13e-53basic leucine-zipper 3
Publications ? help Back to Top
  1. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]