PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010550065.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family HD-ZIP
Protein Properties Length: 274aa    MW: 31013.8 Da    PI: 7.0068
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010550065.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.35.3e-1885137456
                     -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     + +++ eq+++Le+ Fe  +++  e++ +LAk lgL+ rq+ +WFqNrRa++k
  XP_010550065.1  85 KKRLNLEQVRALEKSFELGNKLEPERKIQLAKALGLQPRQIAIWFQNRRARWK 137
                     4568889*********************************************9 PP
2HD-ZIP_I/II126.51.2e-4083173191
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     ekk+rl+ eqv++LE+sFe  +kLeperK +la++Lglqprq+a+WFqnrRAR+ktkqlE+dy aL+++++ lk++n++L++++++L++el
  XP_010550065.1  83 EKKKRLNLEQVRALEKSFELGNKLEPERKIQLAKALGLQPRQIAIWFQNRRARWKTKQLESDYGALRKQFEVLKADNDALHAQNKKLNAEL 173
                     69**************************************************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003893.4E-1882143IPR001356Homeobox domain
SuperFamilySSF466895.56E-1983141IPR009057Homeodomain-like
PROSITE profilePS5007116.48783139IPR001356Homeobox domain
CDDcd000861.46E-1684140No hitNo description
PfamPF000462.9E-1585137IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.6E-1987146IPR009057Homeodomain-like
PRINTSPR000311.4E-5110119IPR000047Helix-turn-helix motif
PROSITE patternPS000270114137IPR017970Homeobox, conserved site
PRINTSPR000311.4E-5119135IPR000047Helix-turn-helix motif
PfamPF021831.3E-12139179IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MDFPPHGFMF QQLHHEDNGG HHLTSPPSLP SCPPHLFHGV GGNYMMNMSM SLLGADQNQK  60
ITTNGHEEAE GDLSDEGSQL LGEKKKRLNL EQVRALEKSF ELGNKLEPER KIQLAKALGL  120
QPRQIAIWFQ NRRARWKTKQ LESDYGALRK QFEVLKADND ALHAQNKKLN AELLALRKKE  180
CNEGKAKGEA EVSWSNNGSR ENGSDMTTTR TQVNMIKDLF PSSIIRSNTA TANQIDHRMA  240
QEESFCNMFN GIDETTSAGY WAWPDQHHHP LPFN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131139RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010550065.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010550065.10.0PREDICTED: homeobox-leucine zipper protein HAT7
SwissprotQ004661e-117HAT7_ARATH; Homeobox-leucine zipper protein HAT7
TrEMBLD7LAH81e-116D7LAH8_ARALL; ATHB20
STRINGXP_010550065.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30952666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01220.11e-107homeobox protein 20