PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010550208.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C2H2
Protein Properties Length: 258aa    MW: 29198 Da    PI: 8.8675
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010550208.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.0003295117223
                     EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                     +C+ C+++++++ +L  H +  H
  XP_010550208.1  95 SCSVCTRVYPTSRLLSIHVSEtH 117
                     6*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.216792IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806992IPR007087Zinc finger, C2H2
SMARTSM003553.294117IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028096117IPR007087Zinc finger, C2H2
SMARTSM003550.074132157IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280134157IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MAMAGDSPPD FGFPYWAPLP RSFPPDSPFF SSGNVERELL AKQVALDLTE DERHQLQMIV  60
ENESRRISCP IVGCGERLSS LENFEAHYHA RHAASCSVCT RVYPTSRLLS IHVSETHDSF  120
FQAKVDRGYA MYECLVEGCG MKFKNYKARH QHLVDKHKFP TTFEFLKKAR PSKKRRERLQ  180
SRHRSKLKQD EGEEGTCSQS MEVEARVDIE GLVSAVSRLA TSDTNISFGR RHGRGLPFVP  240
RSIRRESGPK TPEAPGAT
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010550208.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010550208.10.0PREDICTED: zinc finger protein 511
TrEMBLA0A178UDE41e-130A0A178UDE4_ARATH; Uncharacterized protein
TrEMBLQ0WRF41e-130Q0WRF4_ARATH; Nucleic acid binding / zinc ion binding protein
STRINGXP_010550208.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99712632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.11e-124zinc ion binding;nucleic acid binding;zinc ion binding