PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010550253.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

WOX

Protein Properties

Length: 287aa MW: 30629.1 Da PI: 7.1168

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010550253.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	16.1	2e-05	31	67	2	37
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl 37 r+R+++++eq+ Le+ F++ +p ++e ++ k l XP_010550253.1 31 RTRWSPKPEQILLLESIFNSgMVNPPKDETVRIRKML 67 89***************99**999999998876 PP
2	Wus_type_Homeobox	59.5	7.8e-20	30	76	2	48
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedk 48 artRW+P+peQi +Le++++sG+++P+k+e+ ri+++Le++G+++d+ XP_010550253.1 30 ARTRWSPKPEQILLLESIFNSGMVNPPKDETVRIRKMLEKFGAVGDA 76 689*****************************************997 PP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009734	Biological Process	auxin-activated signaling pathway
GO:0048830	Biological Process	adventitious root development

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MEQQTQDNDH DTKNHGSSSS SSSPVATEPA RTRWSPKPEQ ILLLESIFNS GMVNPPKDET 60 VRIRKMLEKF GAVGDATLRR SWPVKPRRKQ RQLQAAAAEA ATASSAGASS PVSLQANQQG 120 SVISGDGNLY HLGFGGSCGH YFAAPQSHVP SFFLGLSPSS SSGSSSSGSS SSSSSSSGVN 180 AMENLFTMPC QMGYNETDHQ QHTSNVSSIL CPADQNPDVQ FQQGMITVFI NGVPTQVPRG 240 PIHMKAMFGG DLVLLHSSGV PLPTDVFGFL MHPLQHGDAY FLVPRQI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	84	89	KPRRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00330	DAP	Transfer from AT3G03660	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010550253.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010550253.1	0.0	PREDICTED: WUSCHEL-related homeobox 11
Swissprot	Q6X7J3	2e-79	WOX11_ARATH; WUSCHEL-related homeobox 11
TrEMBL	B3H5D3	5e-82	B3H5D3_ARATH; WUSCHEL related homeobox 11
STRING	XP_010550253.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2819	27	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03660.1	6e-50	WUSCHEL related homeobox 11

Publications ? help Back to Top
Hu X,Xu L Transcription Factors WOX11/12 Directly Activate WOX5/7 to Promote Root Primordia Initiation and Organogenesis. Plant Physiol., 2016. 172(4): p. 2363-2373 [PMID:27784768] Sheng L, et al. Non-canonical WOX11-mediated root branching contributes to plasticity in Arabidopsis root system architecture. Development, 2017. 144(17): p. 3126-3133 [PMID:28743799] Liu J, et al. The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture. Plant Cell Physiol., 2018. 59(4): p. 734-743 [PMID:29361138] Baesso B, et al. Transcription factors PRE3 and WOX11 are involved in the formation of new lateral roots from secondary growth taproot in A. thaliana. Plant Biol (Stuttg), 2018. 20(3): p. 426-432 [PMID:29450949]