PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010550261.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family HD-ZIP
Protein Properties Length: 731aa    MW: 81685.6 Da    PI: 6.7386
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010550261.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox603.8e-192881356
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    + +++t++q+++Le++F+++++p++++r +L k+l+L+ +q+k+WFqN+R++ k
  XP_010550261.1 28 NYHRHTTQQIQRLEAYFKECPHPDEHQRCQLGKELDLEPKQIKFWFQNKRTQTK 81
                    56789*********************************************9987 PP
2START120.32.6e-382564743203
                     HHHHHHHHHHHHHHC-TT-EEEE.......EXCCTTEEEEEEESSS...SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEE CS
           START   3 aeeaaqelvkkalaeepgWvkss.......esengdevlqkfeeskv..dsgealrasgvvdmvlallveellddkeqWdetla....kaetlev 84 
                     a  a +elv++   +ep+W kss       ++e ++   q+ +  k+   ++e +++++vv+ ++  lv  +ld+  +W + ++    +a+t+  
  XP_010550261.1 256 AAGAIEELVRLFHIDEPLWIKSSidgrvvvDQEHYENFSQRHTHFKTssARVESSKEVAVVPIEARSLVDMFLDSE-KWVQLFPtivnRAKTIHL 349
                     567899*****************999777766666666666544444778*********************99999.***99999999******* PP

                     ECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE- CS
           START  85 issg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdl 172
                     ++s+      g +qlm+ ++  lsplvp R+f++vR+++  ++g wv++dvS   +++     s+  + ++pSg++i+++s+ghskvtw+ehv++
  XP_010550261.1 350 LESAgpmeqvGSVQLMYEQMHILSPLVPpREFLIVRSCQLAEEGMWVVADVSYYLRDFDFV--SSSNCWKRPSGCIIQDLSDGHSKVTWIEHVEV 442
                     **********************************************************986..6667788************************* PP

                     -SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXX CS
           START 173 kgrlp.hwllrslvksglaegaktwvatlqrq 203
                     +++   h l+r l+  g   ga++w  tl+r 
  XP_010550261.1 443 DDKAHtHRLYRDLLCGGSGYGARRWIVTLERT 474
                     998777********************999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.3E-211085IPR009057Homeodomain-like
SuperFamilySSF466891.71E-181284IPR009057Homeodomain-like
SMARTSM003891.9E-162287IPR001356Homeobox domain
CDDcd000867.96E-172384No hitNo description
PROSITE profilePS5007116.2282383IPR001356Homeobox domain
PfamPF000461.2E-162881IPR001356Homeobox domain
PROSITE profilePS5084838.08245480IPR002913START domain
SuperFamilySSF559614.49E-25247473No hitNo description
CDDcd088752.24E-91249473No hitNo description
SMARTSM002344.6E-24254477IPR002913START domain
PfamPF018527.6E-32259473IPR002913START domain
Gene3DG3DSA:3.30.530.201.6E-5307440IPR023393START-like domain
SuperFamilySSF559616.5E-19499722No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 731 aa     Download sequence    Send to blast
MDSGGRDGAS SEEPGASSNS VSKKNKTNYH RHTTQQIQRL EAYFKECPHP DEHQRCQLGK  60
ELDLEPKQIK FWFQNKRTQT KAQNERADNT LLRTENERIH CENHAIKEAL RNVICPACGG  120
PPFGQEERDH SLQKLRLENA HLKEQLEKVS DLLSKYIGKP ISVMDSRASS SSHEPLPPSL  180
AHQIPPNFSY GSSSNNPEPS DNHRRHHLLP HLHHHPHVFS DPINNNNSNS AQIPAAPVQV  240
QQALSDLEKV MMSETAAGAI EELVRLFHID EPLWIKSSID GRVVVDQEHY ENFSQRHTHF  300
KTSSARVESS KEVAVVPIEA RSLVDMFLDS EKWVQLFPTI VNRAKTIHLL ESAGPMEQVG  360
SVQLMYEQMH ILSPLVPPRE FLIVRSCQLA EEGMWVVADV SYYLRDFDFV SSSNCWKRPS  420
GCIIQDLSDG HSKVTWIEHV EVDDKAHTHR LYRDLLCGGS GYGARRWIVT LERTSHRFAL  480
SNLNNIPTTD FGAVISSGEG RKSMMKLGQR MLKNFTGMLS MSGKLDFPQL SEVNNSGVRV  540
SVRKSMEAGQ PSGVIVSAAS SLWLPLPPSK VFNFFRDVHL RHQWDVLCHG NAVAEVGRIL  600
CGPDENNCVT VLRPFIPTES GMLMLQESFM DSLGGMMVYA PIDIPTMHVA VNGDDPSAVP  660
ILPSGFIISR DGRSSPVTVE GSTLLTVAFQ ILVSGPTYSR DLNMESVATV NTLISSTIQR  720
VKAMLNCVDL E
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010550261.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010550261.10.0PREDICTED: homeobox-leucine zipper protein HDG8
SwissprotQ9M9P40.0HDG8_ARATH; Homeobox-leucine zipper protein HDG8
TrEMBLA0A251PUX60.0A0A251PUX6_PRUPE; Uncharacterized protein
STRINGXP_010550261.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84681531
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03260.10.0homeodomain GLABROUS 8