PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010550265.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family Nin-like
Protein Properties Length: 184aa    MW: 20869.2 Da    PI: 10.6072
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010550265.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK74.41.4e-234692248
          RWP-RK  2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRk 48
                    + +++l+d+ kyF+lp+++AA+ ++vc+Tv+K+iCR+ G++RWPhRk
  XP_010550265.1 46 TGRLTLKDIGKYFHLPVEEAARIMKVCPTVVKKICRRGGLARWPHRK 92
                    5689******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151915.61927116IPR003035RWP-RK domain
PfamPF020421.3E-194992IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MASALVVAPA SASAHDQTTA VKSEEAGSSK KREKKRTPLA VQRERTGRLT LKDIGKYFHL  60
PVEEAARIMK VCPTVVKKIC RRGGLARWPH RKKTADKEHR EEDFEVEECR PRIQRKGLVL  120
NLRSRFLRMR SKRFVPKLSE TLIYRDCDPC DPGPNPVEIS SEGIATSRVE TVFSSPCNLP  180
TRFL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127132RMRSKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010550265.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4159201e-81DQ415920.1 Cleome spinosa clone BAC Cs3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010550265.11e-133PREDICTED: uncharacterized protein LOC104821164
STRINGXP_010550265.11e-132(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40762342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35590.12e-12RWP-RK domain-containing protein