PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010550337.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

LBD

Protein Properties

Length: 242aa MW: 26523.3 Da PI: 8.8955

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010550337.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	100.3	1.9e-31	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C+++C+l+p++ +++q +++ +v+k+FG++ ++++++a+pe++r+++++sl+yeA+ r+ +Pv+Gavg++++++++++q+ XP_010550337.1 2 SCNGCRVLRKGCSENCILRPCIqwiqtAEAQGHATIFVAKFFGRAGLMSFISAVPESQRPALFQSLLYEACGRTVNPVNGAVGLLWTGNWRICQA 96 6*******************9998777889************************************************************* PP DUF260 91 kaelall 97 ++e++l XP_010550337.1 97 AVETVLH 103 *998875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	20.298	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.7E-26	2	101	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006807	Biological Process	nitrogen compound metabolic process
GO:0060776	Biological Process	simple leaf morphogenesis

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence Send to blast
MSCNGCRVLR KGCSENCILR PCIQWIQTAE AQGHATIFVA KFFGRAGLMS FISAVPESQR 60 PALFQSLLYE ACGRTVNPVN GAVGLLWTGN WRICQAAVET VLHGGSLQPI PELLTRGGGF 120 AGFPSPISDE TSEICTEILN LRRDVSGDRN TYHHCRFSSS RSRSTVSPPK RKRLASEQPS 180 SGLDLSLKPN FPVKTAPCKE EIRRAGTPSM NSEESVTMTL TRRSTFWGND VGESTKLLNL 240 FV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010550337.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010550337.1	1e-179	PREDICTED: LOB domain-containing protein 37-like
Swissprot	Q9FN11	1e-124	LBD37_ARATH; LOB domain-containing protein 37
TrEMBL	R0HL69	1e-129	R0HL69_9BRAS; Uncharacterized protein
STRING	XP_010550337.1	1e-179	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM821	28	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67420.1	1e-120	LOB domain-containing protein 37

Publications ? help Back to Top
Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465]