PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010550368.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

Nin-like

Protein Properties

Length: 196aa MW: 22764.3 Da PI: 9.0036

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010550368.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	82.3	4.9e-26	71	120	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 k ++ e +s+yF++pi++AA+eL+++lT+LK++CR++GI+RWPhRk+ sl XP_010550368.1 71 KMLTREIISRYFYMPITQAARELNIGLTLLKKRCRELGIRRWPHRKLMSL 120 78999******************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.302	49	142	IPR003035	RWP-RK domain
Pfam	PF02042	3.2E-21	73	120	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0051302	Biological Process	regulation of cell division

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence Send to blast
MLGCDVDLTG YPAEPYGDEL SVLFQEHNKE EDGCVLEKIE ENMRKESAKT RKISKRCKDD 60 TDSTNICPVS KMLTREIISR YFYMPITQAA RELNIGLTLL KKRCRELGIR RWPHRKLMSL 120 QTLISNVQEL GKMEGEENGG KLRNAVEILE KEKKKIEELP DMEFEDKTKR LRQACFKANY 180 KRKRLMSSAS SSSSFF

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010550368.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010550368.1	1e-143	PREDICTED: protein RKD1-like
Swissprot	Q9M9U9	5e-66	RKD1_ARATH; Protein RKD1
TrEMBL	A0A061FXS1	8e-64	A0A061FXS1_THECC; RWP-RK domain-containing protein, putative
STRING	XP_010550368.1	1e-143	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3966	23	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	3e-60	RWP-RK domain-containing protein