PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010550374.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family LBD
Protein Properties Length: 311aa    MW: 34185 Da    PI: 6.8818
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010550374.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26085.38.6e-277931100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrrkC++              kfa+vhk+FGasnv kll++l+ ++reda++sl+yeAear+rdPvyG+vg+i+ lq++l+ql+++l+
  XP_010550374.1   7 PCAACKFLRRKCTQ-------------XKFAYVHKVFGASNVAKLLNELSSNQREDAVNSLFYEAEARLRDPVYGCVGLISILQHRLKQLQHDLE 88 
                     7**********985.............69*****************************************************************9 PP

          DUF260  96 llkee 100
                      +++e
  XP_010550374.1  89 DARKE 93 
                     99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.587194IPR004883Lateral organ boundaries, LOB
PfamPF031955.3E-26791IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009954Biological Processproximal/distal pattern formation
GO:0009965Biological Processleaf morphogenesis
GO:0048441Biological Processpetal development
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MSSSSSPCAA CKFLRRKCTQ XKFAYVHKVF GASNVAKLLN ELSSNQREDA VNSLFYEAEA  60
RLRDPVYGCV GLISILQHRL KQLQHDLEDA RKELASYIGP QAMLPILQPS PPFMAAPQPL  120
HQLALGNPSS SSAVMAAQHH NMVPMMAIPT AQPHGQLFLR DPHHHQNQQQ QQQIFEAQQL  180
AAAMLVREAQ QPELFRTYGG GFDYNQNQQN QAQVEIVRLN SGFDSASGSV TVTGFNQTSS  240
GATVLSPSLA LGSFDGPPNY QTHQSEQLHH QHESQLFTQT QSAQPRQQAI ETQTQPKSES  300
EEGIGAIAPS C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-353977114LOB family transfactor Ramosa2.1
5ly0_B2e-353977114LOB family transfactor Ramosa2.1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtControls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269|PubMed:12787254, ECO:0000269|PubMed:15821980}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010550374.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010550374.10.0PREDICTED: LOW QUALITY PROTEIN: LOB domain-containing protein 36
SwissprotQ9FKZ33e-94LBD36_ARATH; LOB domain-containing protein 36
TrEMBLV4K0191e-104V4K019_EUTSA; Uncharacterized protein
STRINGXP_010550374.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM80082441
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66870.14e-94ASYMMETRIC LEAVES 2-like 1
Publications ? help Back to Top
  1. Kim M,Kim MJ,Pandey S,Kim J
    Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
    Plant Cell Physiol., 2016. 57(11): p. 2291-2299
    [PMID:27519310]
  2. Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A
    SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 92(6): p. 661-674
    [PMID:27605094]