PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010550390.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family GRAS
Protein Properties Length: 605aa    MW: 66362.3 Da    PI: 4.741
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010550390.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS358.69e-1102366052374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                      ++L +cA+a +s +  +a ++L +++e +s+ gdp++R+ +yf eAL+ rl++      ++ ++ ++s+ + ++ +++++++++++P+lkf+hl
  XP_010550390.1 236 LKTLHDCARAADS-EPDRAAEALVQIRESVSELGDPTERVGFYFSEALRGRLSQ------ESAATARESPASLEDFIHSYNTLNDACPYLKFAHL 323
                     57899****8777.6777888999*****************************9......4455555555779********************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     taNqaIlea+++++++Hi+Df+i qG+QW aLlqaLa+R++g+p ++Ri g+ +p+ g     +l +tg+rL++fA+ l+++fef++ + + ++ 
  XP_010550390.1 324 TANQAILEATDQASKIHIVDFGIVQGIQWSALLQALATRASGKPaRIRISGIPAPSLGesPGPSLVATGNRLRDFARLLDLNFEFDP-ILTPIHL 417
                     ****************************************77666**********99988999************************.799**** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     l+ +++rv+++Eal Vn++lql++llde+ s  +   + L+l ksl P++v++ e e+++n+  F +r+ +al++ysa+f+sle +l+r+s++r 
  XP_010550390.1 418 LNGSSFRVDQDEALTVNFMLQLYNLLDETPSAVE---TALRLAKSLGPRIVTLGEYEVSLNRVGFSNRVKNALRFYSAVFESLEPNLSRDSQDRL 509
                     **************************99999999...9********************************************************* PP

            GRAS 284 kvErellgreivnvvacegae...rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaW 373
                      +Er+llgr+i++++  e+      rer+e +e+Wr  +e++GF++v+ls++a++qak ll +++ s  y++ e++  ++ l W+d pL++vS+W
  XP_010550390.1 510 RIERVLLGRRISSLIGPENPGtrtGRERMEDKEQWRILMEKSGFESVALSNYAVSQAKILLWNYNySTLYSLIESEPGFIsLAWNDVPLLTVSSW 604
                     ***************999765312579**************************************9999***999999999************** PP

            GRAS 374 r 374
                     r
  XP_010550390.1 605 R 605
                     8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.494209583IPR005202Transcription factor GRAS
PfamPF035143.1E-107236605IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 605 aa     Download sequence    Send to blast
MAYMCADSGN LMAIAQQVIK QKQQQEQQQQ QQQDHQIFGI NPLSINPWPN TTHQSLGFGL  60
PGPGFPDAFH VSAAGDSGDP FPQLDHHHPV SAGGGFRFSD FGGGTGCEFD SDEWMESLIG  120
GGDSAADGPN CHTWPSNPEF AIYGPDPFVA CPTRLSAACS QPSDLNRVIF SDKNDPASPL  180
HQPPVSTSMW ATSPPLAHPL PPPPQQITQT AVAKDLEKND SFGADSPYFD LEVPLLKTLH  240
DCARAADSEP DRAAEALVQI RESVSELGDP TERVGFYFSE ALRGRLSQES AATARESPAS  300
LEDFIHSYNT LNDACPYLKF AHLTANQAIL EATDQASKIH IVDFGIVQGI QWSALLQALA  360
TRASGKPARI RISGIPAPSL GESPGPSLVA TGNRLRDFAR LLDLNFEFDP ILTPIHLLNG  420
SSFRVDQDEA LTVNFMLQLY NLLDETPSAV ETALRLAKSL GPRIVTLGEY EVSLNRVGFS  480
NRVKNALRFY SAVFESLEPN LSRDSQDRLR IERVLLGRRI SSLIGPENPG TRTGRERMED  540
KEQWRILMEK SGFESVALSN YAVSQAKILL WNYNYSTLYS LIESEPGFIS LAWNDVPLLT  600
VSSWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1442346053375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010550390.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019058982.10.0PREDICTED: scarecrow-like protein 4
SwissprotQ9FL030.0SCL4_ARATH; Scarecrow-like protein 4
TrEMBLE4MVR50.0E4MVR5_EUTHA; mRNA, clone: RTFL01-01-I07
TrEMBLV4KUV40.0V4KUV4_EUTSA; Uncharacterized protein
STRINGXP_010550390.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47862752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.10.0GRAS family protein
Publications ? help Back to Top
  1. Wortman JR, et al.
    Annotation of the Arabidopsis genome.
    Plant Physiol., 2003. 132(2): p. 461-8
    [PMID:12805579]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]