PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010550439.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family SRS
Protein Properties Length: 347aa    MW: 36719.5 Da    PI: 8.0673
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010550439.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702220.53.5e-681282783153
          DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa...aeaaskrkrelkskkqsalsstklssa 94 
                     sg++sCqdCGnqakkdCah RCR CCksrgf+C+thvkstWvpaakrrerqq+laa +++ ++++    e+ +kr+re  + ++s+l +t+l+ +
  XP_010550439.1 128 SGGVSCQDCGNQAKKDCAHLRCRACCKSRGFECQTHVKSTWVPAAKRRERQQHLAAIQHQPQTQTqtrGESVPKRQRE--NLASSSLVCTRLPAN 220
                     6889***************************************************99988777664334455555555..478899999**9998 PP

          DUF702  95 eskkeletsslPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGle 153
                     +s   le+ ++P+e+ss+avfrcvrvssvd  ge+++aYqtavsigGhvfkGiLydqG++
  XP_010550439.1 221 TSG--LEMGQFPPELSSPAVFRCVRVSSVDVeGEDQFAYQTAVSIGGHVFKGILYDQGPD 278
                     765..88899********************559*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051422.8E-64130278IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016234.0E-26132174IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016242.6E-25228277IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010252Biological Processauxin homeostasis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048479Biological Processstyle development
GO:0048480Biological Processstigma development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MAGFFSLGGG GGGGGGGSNQ DEHNQGTNTN PPPVTDAWRW YRNPNSPTAN AADITSSYKG  60
TLELWQHQNQ QEIIFHQQQH QQRLDLYSSA AGLGVGPSSR TQFDISGETS AAAVANRAAL  120
MMLRTGVSGG VSCQDCGNQA KKDCAHLRCR ACCKSRGFEC QTHVKSTWVP AAKRRERQQH  180
LAAIQHQPQT QTQTRGESVP KRQRENLASS SLVCTRLPAN TSGLEMGQFP PELSSPAVFR  240
CVRVSSVDVE GEDQFAYQTA VSIGGHVFKG ILYDQGPDCS GGAAESSSCG GSQPLNLITA  300
VSSSSPNIGN KGGGGSSSSG YIDPSSLHPT PINTFMAGTQ FFPNPRS
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:12361963, ECO:0000269|PubMed:16740145, ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18811619, ECO:0000269|PubMed:20154152, ECO:0000269|PubMed:22318676}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00613PBMTransfer from AT3G51060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010550439.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269|PubMed:21976484}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010550439.10.0PREDICTED: protein SHI RELATED SEQUENCE 1-like
SwissprotQ9SD401e-137SRS1_ARATH; Protein SHI RELATED SEQUENCE 1
TrEMBLA0A0D3A8F71e-145A0A0D3A8F7_BRAOL; Uncharacterized protein
TrEMBLA0A3P6EZB11e-145A0A3P6EZB1_BRAOL; Uncharacterized protein
STRINGXP_010550439.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34192864
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51060.11e-113Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]