PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010550442.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family GATA
Protein Properties Length: 392aa    MW: 42666.6 Da    PI: 6.653
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010550442.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.87.2e-19301335135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     Cs+Cg+ kTp+WR gp g ktLCnaCG++y++ +l
  XP_010550442.1 301 CSHCGVQKTPQWRAGPLGAKTLCNACGVRYKSGRL 335
                     *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577162.38E-15294357No hitNo description
SMARTSM004014.1E-17295349IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.714295331IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.1E-14299333IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.24E-15300348No hitNo description
PROSITE patternPS003440301326IPR000679Zinc finger, GATA-type
PfamPF003209.2E-17301335IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MLYQTHHHPF IFSPSHHHHL LLHLHPHPLS LPLSSASPSN LLLSFLPQEM ERVEGALKSS  60
VRKEMAMRLT PPAFVDDLLA VSSQNGVCPE DFSVDDLLDL SNDDVFADEV AGEDAQPNDQ  120
PERASVSSED PQCDGNTLLR CTHFSAGDDF GPAPTSELSV PADDLANLEW LSHFVDDSFS  180
EYSAPYLTGS PREKPAWLTG DRKHPVTPVN EESCFKAPVP AKARSKRART GGRVWSFGSP  240
SFTDSSSSST SSSSSSGPTS PWFGGAELLE PVVTSERPPV PKRQKKKPSE AVAGGQQPRR  300
CSHCGVQKTP QWRAGPLGAK TLCNACGVRY KSGRLLPEYR PASSPTFSSE RHSNHHRKVL  360
EMRRKKDPVG GGEDIEPGLN LPVQTASVVP SF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1280287PKRQKKKP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010550442.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010550442.10.0PREDICTED: GATA transcription factor 5 isoform X1
SwissprotQ9FH571e-141GATA5_ARATH; GATA transcription factor 5
TrEMBLA0A178UHW11e-138A0A178UHW1_ARATH; GATA transcription factor
STRINGXP_010550442.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36982561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.21e-125GATA transcription factor 5