PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010550443.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family GATA
Protein Properties Length: 352aa    MW: 38243.6 Da    PI: 6.6243
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010550443.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA596.3e-19261295135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     Cs+Cg+ kTp+WR gp g ktLCnaCG++y++ +l
  XP_010550443.1 261 CSHCGVQKTPQWRAGPLGAKTLCNACGVRYKSGRL 295
                     *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169929.2E-9617352IPR016679Transcription factor, GATA, plant
SuperFamilySSF577162.0E-15254317No hitNo description
PROSITE profilePS5011411.714255291IPR000679Zinc finger, GATA-type
SMARTSM004014.1E-17255309IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.109.8E-15259293IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.05E-15260308No hitNo description
PROSITE patternPS003440261286IPR000679Zinc finger, GATA-type
PfamPF003208.0E-17261295IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MRKRNKFLEM ERVEGALKSS VRKEMAMRLT PPAFVDDLLA VSSQNGVCPE DFSVDDLLDL  60
SNDDVFADEV AGEDAQPNDQ PERASVSSED PQCDGNTLLR CTHFSAGDDF GPAPTSELSV  120
PADDLANLEW LSHFVDDSFS EYSAPYLTGS PREKPAWLTG DRKHPVTPVN EESCFKAPVP  180
AKARSKRART GGRVWSFGSP SFTDSSSSST SSSSSSGPTS PWFGGAELLE PVVTSERPPV  240
PKRQKKKPSE AVAGGQQPRR CSHCGVQKTP QWRAGPLGAK TLCNACGVRY KSGRLLPEYR  300
PASSPTFSSE RHSNHHRKVL EMRRKKDPVG GGEDIEPGLN LPVQTASVVP SF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1240247PKRQKKKP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010550443.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010550443.10.0PREDICTED: GATA transcription factor 5 isoform X2
SwissprotQ9FH571e-142GATA5_ARATH; GATA transcription factor 5
TrEMBLA0A178UHW11e-139A0A178UHW1_ARATH; GATA transcription factor
STRINGXP_010550442.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.21e-126GATA transcription factor 5