PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010550456.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ARR-B
Protein Properties Length: 538aa    MW: 60207.1 Da    PI: 5.2684
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010550456.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like84.41.2e-26173227155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k+r++Wt eLH++Fv+av+q+G  +kA Pk+il+lm+v+ Lt+e+v+SHLQkYRl
  XP_010550456.1 173 KARVVWTFELHQKFVHAVNQIGCDHKAGPKKILDLMNVPWLTRENVASHLQKYRL 227
                     68****************************************************8 PP
2Response_reg56.51.6e-19159726107
                     EEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHH CS
    Response_reg  26 vaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeel 107
                     v+++  ++eal+ll+e++  +D+++ D++mp+mdG++ll++   e  +lp+i+++  ge + + + ++ Ga d+l Kp+ ++el
  XP_010550456.1  15 VTTCGLAREALKLLRERKdgYDIVISDVNMPDMDGFKLLEHVGLEM-DLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKEL 97 
                     56777789******999999**********************6644.8*******************************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011030.2911105IPR001789Signal transduction response regulator, receiver domain
SMARTSM004481.4E-91101IPR001789Signal transduction response regulator, receiver domain
PIRSFPIRSF0363923.3E-12214511IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23001.0E-3015112No hitNo description
CDDcd001561.37E-2115105No hitNo description
SuperFamilySSF521726.83E-2415112IPR011006CheY-like superfamily
PfamPF000722.8E-161798IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:1.10.10.603.0E-28171232IPR009057Homeodomain-like
SuperFamilySSF466895.02E-17171231IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-22173227IPR006447Myb domain, plants
PfamPF002499.7E-8175226IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009735Biological Processresponse to cytokinin
GO:0010082Biological Processregulation of root meristem growth
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MKVPSPSCSS PLLLVTTCGL AREALKLLRE RKDGYDIVIS DVNMPDMDGF KLLEHVGLEM  60
DLPVIMMSVD GETSRVMKGV QHGACDYLLK PIRMKELKII WQHVLRKKLQ EFRDVEGYEG  120
AESIWISRHG LDQSEDAHFL GGEEVSFGRK RKDTEKKQHQ DDRDLTDPSS TKKARVVWTF  180
ELHQKFVHAV NQIGCDHKAG PKKILDLMNV PWLTRENVAS HLQKYRLYLS RLEKEKGQKN  240
MDSPPKDAEV CPSHQSPRKI QPAEVQNSSY TFSGGSPGVQ TPNPSATDVD QKGIASTAVS  300
ETKISNILSP QKAKKPRTGY DPSLAPFASE ASPSVMNSSL PQQYSWNDVP QFLESKPISL  360
GGSFLPQPLT GQSYYAENPV PCLIETEVKP PFEIPVSSCL NRVAPVNGDD FLLQQDKNST  420
MGLHDLSAPS SISGTMLQES NCSIPCNTES ILRNLNWDFP EPHPAASLDR DLGLFWLQGD  480
RFLENSGLQN TEFTDYNDPS FLAAYPLHMY DATRFDNELL LLPDQDEYSL VDQGLFIV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A8e-18169232163ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250, ECO:0000269|PubMed:12610214}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00010PBMTransfer from AT1G67710Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010550456.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010534176.10.0PREDICTED: two-component response regulator ARR11-like isoform X2
RefseqXP_010550456.10.0PREDICTED: two-component response regulator ARR11-like isoform X2
SwissprotQ9FXD60.0ARR11_ARATH; Two-component response regulator ARR11
TrEMBLA0A087HGC40.0A0A087HGC4_ARAAL; Two-component response regulator
STRINGXP_010534175.10.0(Tarenaya hassleriana)
STRINGXP_010550447.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.11e-179response regulator 11
Publications ? help Back to Top
  1. Zwack PJ, et al.
    Cytokinin Response Factor 6 Represses Cytokinin-Associated Genes during Oxidative Stress.
    Plant Physiol., 2016. 172(2): p. 1249-1258
    [PMID:27550996]
  2. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]