PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010550761.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 269aa    MW: 31022.7 Da    PI: 8.7963
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010550761.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.72.7e-182067148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEde+l ++v ++G g+W+t++ + g+ Rt+k+c++rw +yl
   XP_010550761.1 20 RGLWSPEEDEKLRNYVFKHGHGCWSTVSVKAGLQRTGKSCRLRWVNYL 67
                     788*******************************************97 PP
2Myb_DNA-binding50.83.8e-1676118448
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       T+eE+++ + ++++lG++ W+ I+++++ gRt++++k++w++yl
   XP_010550761.1  76 LTKEEEDIVLSLHNKLGNR-WSQISKYLP-GRTDNEIKNYWHSYL 118
                      59*****************.*********.************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.4441567IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-221568IPR009057Homeodomain-like
SuperFamilySSF466892.88E-3018114IPR009057Homeodomain-like
SMARTSM007173.8E-141969IPR001005SANT/Myb domain
PfamPF002492.8E-162067IPR001005SANT/Myb domain
CDDcd001677.03E-122367No hitNo description
PROSITE profilePS5129426.2768122IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.4E-2469122IPR009057Homeodomain-like
SMARTSM007171.4E-1572120IPR001005SANT/Myb domain
PfamPF002497.1E-1576118IPR001005SANT/Myb domain
CDDcd001675.04E-1277118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MVYKSKNYDK KLKSNEKQKR GLWSPEEDEK LRNYVFKHGH GCWSTVSVKA GLQRTGKSCR  60
LRWVNYLRPG LKKGLLTKEE EDIVLSLHNK LGNRWSQISK YLPGRTDNEI KNYWHSYLKK  120
RIITAVKTTS TPNSMYQPTY SPSNSLETLM TTQTSPQNTV GGSSPSDPRE HNIVSPHQIS  180
TTYLPRLMFA EWFSPDFATN GPTRESNIQD FILQDCLLDE TFDNSYSAAI GSIDNIVPDS  240
RFWPNDETTS NEFCNSFSDN IYIHESRMQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-25201247110B-MYB
1h8a_C5e-252012227128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010550761.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010550761.10.0PREDICTED: transcription factor LAF1
SwissprotQ9M0K43e-59LAF1_ARATH; Transcription factor LAF1
STRINGXP_010550761.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48920.11e-77myb domain protein 45
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]