PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010550833.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

G2-like

Protein Properties

Length: 309aa MW: 33304.5 Da PI: 7.2212

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010550833.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	109	2.5e-34	42	96	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQkYRl XP_010550833.1 42 KPRLRWTAELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRL 96 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.5E-33	39	97	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.612	39	99	IPR017930	Myb domain
SuperFamily	SSF46689	2.87E-17	41	96	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.5E-24	42	97	IPR006447	Myb domain, plants
Pfam	PF00249	9.5E-9	44	95	IPR001005	SANT/Myb domain
Pfam	PF14379	1.4E-26	140	186	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009567	Biological Process	double fertilization forming a zygote and endosperm
GO:0010628	Biological Process	positive regulation of gene expression
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
MYSAIRSLPL DGSVGRHGAN HGALDGTNLP GDACLVLTTD PKPRLRWTAE LHERFVDAVT 60 QLGGPDKATP KTIMRTMGVK GLTLYHLKSH LQKYRLGRQV CKESNENSKD ASCVGESQDT 120 GSSSTSSLRM AVQEQNEGYQ VTEALRAQME VQRRLHEQLE VQRRLQLRIE AQGKYLQTIL 180 EKACKALDEQ AAAFAGLEAA REELSELAIK VSNGFQGTAV SSDTTKMMMP SLSELAEAIE 240 HQTTATNNNN CSVESSLASS TNAGSPVSAA MAKKRHRGGV FGNADSVVLA EGTMRQGGTE 300 WVMPGSTIG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	4e-20	42	98	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-20	42	98	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-20	42	98	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-20	42	98	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	271	277	AKKRHRG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Probable component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). Required for female gametophyte development and function (PubMed:15634699). {ECO:0000269\|PubMed:15634699, ECO:0000269\|PubMed:26586833}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010550833.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010550833.1	0.0	PREDICTED: protein PHR1-LIKE 3-like
Swissprot	Q8LAJ7	1e-169	PHL3_ARATH; Protein PHR1-LIKE 3
TrEMBL	E4MXI8	1e-168	E4MXI8_EUTHA; mRNA, clone: RTFL01-27-H18
TrEMBL	V4P9H3	1e-168	V4P9H3_EUTSA; Uncharacterized protein
STRING	XP_010550833.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3515	25	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13640.1	1e-150	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Sanz-Fernández M, et al. Screening Arabidopsis mutants in genes useful for phytoremediation. J. Hazard. Mater., 2017. 335: p. 143-151 [PMID:28441590]