PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010550843.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family GATA
Protein Properties Length: 274aa    MW: 29841.4 Da    PI: 8.297
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010550843.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.92.8e-18191225135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++Cg+ kTp+WR gp g+ tLCnaCG+++++ +l
  XP_010550843.1 191 CTHCGSEKTPQWRGGPAGPNTLCNACGVRFKSGRL 225
                     *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.848185221IPR000679Zinc finger, GATA-type
SMARTSM004011.6E-16185235IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.43E-14187249No hitNo description
Gene3DG3DSA:3.30.50.103.8E-14189223IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.16E-15190240No hitNo description
PROSITE patternPS003440191216IPR000679Zinc finger, GATA-type
PfamPF003204.2E-16191225IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MTWDSFDMDD LLNFSDPEEE NVDADEKRPP ARKKILRPAD SFGLVDPGDP KIVEEEDLEW  60
ISNEDAFPLF ETFVEALPSD QRLRLMSSEN VAAFQFSPIT VLETRSCSST SLTSTTTTTT  120
TNSSGSCDGS EAATAGGSTA IMSCSGGLNV PVKARSKRRH PTRVDLPSVS THHVETPPRK  180
KRALDASGRK CTHCGSEKTP QWRGGPAGPN TLCNACGVRF KSGRLVPEYR PANSPTFSPG  240
LHSNSHRKVM KLMMQRQQVG KSSSPATRKT VNKG
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010550843.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010550843.10.0PREDICTED: GATA transcription factor 1 isoform X1
SwissprotQ8LAU95e-67GATA1_ARATH; GATA transcription factor 1
TrEMBLA0A1J3EDR93e-70A0A1J3EDR9_NOCCA; GATA transcription factor 1
TrEMBLA0A1J3GHK43e-70A0A1J3GHK4_NOCCA; GATA transcription factor 1
STRINGXP_010550843.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM129872430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.13e-67GATA transcription factor 1