PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010550844.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family GATA
Protein Properties Length: 225aa    MW: 24297.4 Da    PI: 10.1848
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010550844.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.32.1e-18142176135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++Cg+ kTp+WR gp g+ tLCnaCG+++++ +l
  XP_010550844.1 142 CTHCGSEKTPQWRGGPAGPNTLCNACGVRFKSGRL 176
                     *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.848136172IPR000679Zinc finger, GATA-type
SMARTSM004011.6E-16136186IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.98E-15138200No hitNo description
Gene3DG3DSA:3.30.50.102.8E-14140174IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.68E-15141191No hitNo description
PfamPF003203.2E-16142176IPR000679Zinc finger, GATA-type
PROSITE patternPS003440142167IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MKIVEEEDLE WISNEDAFPL FETFVEALPS DQRLRLMSSE NVAAFQFSPI TVLETRSCSS  60
TSLTSTTTTT TTNSSGSCDG SEAATAGGST AIMSCSGGLN VPVKARSKRR HPTRVDLPSV  120
STHHVETPPR KKRALDASGR KCTHCGSEKT PQWRGGPAGP NTLCNACGVR FKSGRLVPEY  180
RPANSPTFSP GLHSNSHRKV MKLMMQRQQV GKSSSPATRK TVNKG
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010550844.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010550844.11e-166PREDICTED: GATA transcription factor 1 isoform X2
SwissprotQ8LAU92e-54GATA1_ARATH; GATA transcription factor 1
TrEMBLA0A1J3EDR95e-58A0A1J3EDR9_NOCCA; GATA transcription factor 1
TrEMBLA0A1J3GHK45e-58A0A1J3GHK4_NOCCA; GATA transcription factor 1
STRINGXP_010550843.11e-163(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.12e-54GATA transcription factor 1