PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010551022.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C3H
Protein Properties Length: 139aa    MW: 15445.4 Da    PI: 8.7306
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010551022.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH171e-0565791327
                    S--TTTTT-SS-SSS CS
         zf-CCCH 13 GtCkyGdrCkFaHgp 27
                    G+C +Gd+Ck+ H++
  XP_010551022.1 65 GFCGFGDSCKYLHPK 79
                    9************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004510.0022338IPR003604Zinc finger, U1-type
SuperFamilySSF576671.7E-12449No hitNo description
PfamPF062209.0E-9536IPR013085Zinc finger, U1-C type
PROSITE profilePS5010312.3615280IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.11E-65579IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-45879IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MPSGKYYCDY CDKEFQDTLV ARKRHLQSKP HLRAKSLWFS SLSDPNPRGP HTLPRGFCDR  60
FVSWGFCGFG DSCKYLHPKH IPAVAGFTGS QTQIGLNIQR TPGSEYISGL STTGWGDLPP  120
SLQPAPESGY PRLPSVDWG
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010551022.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010551022.11e-100PREDICTED: zinc finger CCCH domain-containing protein 3 isoform X1
SwissprotQ0JP112e-31C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3
TrEMBLV4K3W58e-58V4K3W5_EUTSA; Uncharacterized protein
STRINGXP_010551022.12e-99(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM104742225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26749.12e-55C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]