PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010551125.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

NAC

Protein Properties

Length: 235aa MW: 27127.9 Da PI: 4.7547

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010551125.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	176.3	8.8e-55	6	135	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhPtdeelv++yLk+k++g+++el ++i+evd+yk+ePw+L k + +++ ewyfF +rd+ky++g r+nrat+ gyWk+tgkd++v+ XP_010551125.1 6 LPPGFRFHPTDEELVNYYLKRKINGEEIEL-DIIPEVDLYKCEPWELAdKsFLPSRDPEWYFFGPRDRKYPNGFRTNRATRGGYWKSTGKDRRVT 99 79**************************.99**********85335566888********************************* PP NAM 94 sk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 s+ +++++g+kktLv+y+grap+g +tdWvmheyrl XP_010551125.1 100 SQsQNRAIGMKKTLVYYRGRAPQGIRTDWVMHEYRL 135 9877788*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.96E-64	4	159	IPR003441	NAC domain
PROSITE profile	PS51005	61.547	6	158	IPR003441	NAC domain
Pfam	PF02365	2.4E-30	7	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MAPVGLPPGF RFHPTDEELV NYYLKRKING EEIELDIIPE VDLYKCEPWE LADKSFLPSR 60 DPEWYFFGPR DRKYPNGFRT NRATRGGYWK STGKDRRVTS QSQNRAIGMK KTLVYYRGRA 120 PQGIRTDWVM HEYRLDDKDD LDSSPLQDSY ALCRVFKKNG ICSEVEDQQQ RGECSSFTLM 180 ENSNNEYETM SSACPEDDDK DDSWMQFITD DAWDSNASAA VMGSDHGHGH GQGVY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-53	1	159	12	166	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-53	1	159	12	166	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-53	1	159	12	166	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-53	1	159	12	166	NO APICAL MERISTEM PROTEIN
4dul_A	2e-53	1	159	12	166	NAC domain-containing protein 19
4dul_B	2e-53	1	159	12	166	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00363	DAP	Transfer from AT3G17730	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010551125.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010551125.1	1e-178	PREDICTED: NAC domain-containing protein 86
Swissprot	Q9FFI5	1e-86	NAC86_ARATH; NAC domain-containing protein 86
TrEMBL	V4M037	1e-135	V4M037_EUTSA; Uncharacterized protein
STRING	XP_010551125.1	1e-178	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8504	28	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G17730.1	1e-127	NAC domain containing protein 57

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]