PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010551135.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family WOX
Protein Properties Length: 379aa    MW: 43243.2 Da    PI: 7.908
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010551135.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox68.67.7e-2259118357
                     --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                     +R+++t+eql++Le+l+++ +r+psa+++++++++l    +++ ++V++WFqN++a+e++
  XP_010551135.1  59 SRWNPTPEQLRVLEDLYRRgTRTPSADQIQQITSQLrrygKIEGKNVFYWFQNHKARERQ 118
                     8*****************99**************************************97 PP
2Wus_type_Homeobox117.84.8e-3857120265
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        +++RW+PtpeQ+++Le+ly++G+rtP++++iq+it++L++yGkie+kNVfyWFQN+kaRerqk+
     XP_010551135.1  57 SSSRWNPTPEQLRVLEDLYRRGTRTPSADQIQQITSQLRRYGKIEGKNVFYWFQNHKARERQKR 120
                        579***********************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003894.3E-656123IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.9E-959118IPR009057Homeodomain-like
PfamPF000462.0E-1959118IPR001356Homeobox domain
SuperFamilySSF466891.33E-1259124IPR009057Homeodomain-like
CDDcd000869.51E-760120No hitNo description
PROSITE profilePS5007111.17564119IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048513Biological Processanimal organ development
GO:0099402Biological Processplant organ development
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MWMMGYNEGG ADPMSGAGRK LRPLIPRLSS SSTKPTEVFS LSPHLGNESK REAVVVSSSR  60
WNPTPEQLRV LEDLYRRGTR TPSADQIQQI TSQLRRYGKI EGKNVFYWFQ NHKARERQKR  120
RRQMESSSEH INNHDHEQEH LMTIALNNHG FEKKDSGSNR TGYEVEQTKN WIYSTPCTTL  180
PEHQESVTRG RGTMAVMAGG DCRAENRWVH LNGRGEDDAL LLQTDHRRNF LGRNSTWQML  240
HLPPDTTHQY PLILNSTTVS SISTNNNAVC SSSSAKTPVA VPVLPSHPQV FFNARKMMNA  300
KDTRNHLKGQ EHYHHQDCCG DGEDDSHDQT LQLFPLSKEE DCNNGNEKET GKVAGVELMN  360
DFSCFSPIYR FYEFLPLKN
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010551135.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010551135.10.0PREDICTED: WUSCHEL-related homeobox 1
TrEMBLV4M7116e-96V4M711_EUTSA; Uncharacterized protein
STRINGXP_010551135.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73972741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.14e-88WUSCHEL related homeobox 1