PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010551197.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

C2H2

Protein Properties

Length: 238aa MW: 27101.1 Da PI: 9.7887

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010551197.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.8	0.00017	59	81	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+k Fs++ L H+ H XP_010551197.1 59 YPCNFCKKEFSSSQALGGHQIAH 81 99**************9999877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	6.27E-7	56	87	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.3E-5	57	86	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF13912	3.3E-7	58	83	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	11.531	59	86	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	61	81	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MENQVISISS SDSSSTKQVK RKAMEETQIL SRSDKKETRR SRWLEDIQKV GSSSRSRVYP 60 CNFCKKEFSS SQALGGHQIA HKQEREWERR RRQIGSEYPW MALLPAHLNR SPISSTASWT 120 NSLSYDNHLG SRFDTFFQNP SNLFSPTVRY NSGYGGMAMT RDLVPTDGFS RNFSPVGDFP 180 RNFFGPSENT VIGDGYSRNL MATVGETSFN DKNPVHREDV HLKNDSAKDW GQDLSLKI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010551197.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010551197.1	1e-179	PREDICTED: zinc finger protein 7-like
STRING	XP_010551197.1	1e-178	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6363	18	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G27880.1	7e-19	C2H2 family protein