PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010551213.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family M-type_MADS
Protein Properties Length: 203aa    MW: 22096 Da    PI: 6.274
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010551213.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF47.52.3e-151353444
                    -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
          SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                    e ks+r+vtfskRr g++KKA ELS   +a++av+   ++g
  XP_010551213.1 13 ETKSQRSVTFSKRRLGLFKKAAELSAISGAQIAVLATPPSG 53
                    7799******************************9887766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.5E-17261IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.147253IPR002100Transcription factor, MADS-box
CDDcd002661.98E-22383No hitNo description
SuperFamilySSF554559.29E-16362IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-8424IPR002100Transcription factor, MADS-box
PfamPF003191.0E-141355IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-82439IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MGTKRKIAMA KRETKSQRSV TFSKRRLGLF KKAAELSAIS GAQIAVLATP PSGNPNAVYS  60
GPFGHSYTDA VVDAFLSGRI PTAHNFLPDK NLGSGFLSEN CDDELGILIE KLISDLKNSP  120
GSGFLSENCD DDLLILIEKL SDLKNNPGSR FLSENCDDPD ELRIQIEKLS DLKDCVGIIQ  180
RKREEQIVSC GHNLDKDSNA KSA
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010551213.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010551213.11e-147PREDICTED: agamous-like MADS-box protein AGL62, partial
STRINGXP_010551213.11e-146(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46408.11e-22AGAMOUS-like 97