PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010551244.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 282aa    MW: 32794.3 Da    PI: 5.0961
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010551244.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.21.6e-171764148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd ll ++++  G g+W+ +a++ g++Rt+k+c++rw++yl
   XP_010551244.1 17 RGPWTLEEDTLLTNYIAHNGEGRWNMVAKCAGLKRTGKSCRLRWLNYL 64
                     89********************************************97 PP
2Myb_DNA-binding52.89.3e-1770113146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T++E++l+++++ ++G++ W++Ia++++ gRt++++k++w++
   XP_010551244.1  70 RGNLTPQEQLLILELHSKWGNR-WSKIAQHLP-GRTDNEIKNYWRT 113
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.9921264IPR017930Myb domain
SuperFamilySSF466899.98E-3115111IPR009057Homeodomain-like
SMARTSM007171.8E-141666IPR001005SANT/Myb domain
PfamPF002491.6E-151764IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.6E-231871IPR009057Homeodomain-like
CDDcd001672.45E-101964No hitNo description
PROSITE profilePS5129425.75165119IPR017930Myb domain
SMARTSM007172.7E-1569117IPR001005SANT/Myb domain
PfamPF002499.3E-1670113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2372118IPR009057Homeodomain-like
CDDcd001673.13E-1174113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MKNSFESNET EEAELRRGPW TLEEDTLLTN YIAHNGEGRW NMVAKCAGLK RTGKSCRLRW  60
LNYLKPDIKR GNLTPQEQLL ILELHSKWGN RWSKIAQHLP GRTDNEIKNY WRTRVQKQAR  120
QLNIESNSEK FFDAVRSFWM PRLLEKMEQQ NSSSDSASCS SRPSDNCPRG SDDLLLPSQS  180
LNPNEHCSSS TPDFETVPQL MDLSDQNLMQ FHGGSQCVSE EEYGYGHHHH HFHGFEDYMA  240
SSMGNLDISP LECHVEDGDS MMYEDVTQDP MWNMDDIWQF RE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-24141191105MYB PROTO-ONCOGENE PROTEIN
1h8a_C7e-241411924128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010551244.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010551244.10.0PREDICTED: myb-related protein 305-like
SwissprotQ9C9G71e-121MYB62_ARATH; Transcription factor MYB62
TrEMBLA0A178WLK61e-118A0A178WLK6_ARATH; MYB62
STRINGXP_010551244.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26322571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.11e-116myb domain protein 62
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]