PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010551273.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ERF
Protein Properties Length: 344aa    MW: 37951.4 Da    PI: 4.7476
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010551273.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.17e-16120161247
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaai 47 
                     +  GVr++k +g+W+AeIr+p     + +r +lg+fgt eeAaka+ 
  XP_010551273.1 120 KPVGVRQRK-WGKWAAEIRHPI----TkARTWLGTFGTLEEAAKAYA 161
                     678*****9.**********72....36*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103216.595120180IPR001471AP2/ERF domain
PfamPF008474.2E-10120160IPR001471AP2/ERF domain
SMARTSM003802.5E-14120174IPR001471AP2/ERF domain
PRINTSPR003671.0E-6121132IPR001471AP2/ERF domain
SuperFamilySSF541714.77E-14122166IPR016177DNA-binding domain
CDDcd000181.24E-19122160No hitNo description
Gene3DG3DSA:3.30.730.101.8E-18123164IPR001471AP2/ERF domain
PRINTSPR003671.0E-6143159IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MAERRKRSSS HTDISPSKKH KMNTLPVSQI LPRETEPLRK VRVFVNDPYA TDDSSSDEEF  60
DYPKPPKPKR LVREINLFPL QQPLVRRIEL SESSSQDSTH GVKVPSTKNP IKKARSFSNK  120
PVGVRQRKWG KWAAEIRHPI TKARTWLGTF GTLEEAAKAY ADKKVEFDAL VVSSGSASVS  180
ENRSNGVKLA VSSSVGSENS QCSRSSPVLE LDTSASAPVS TDGSDLRKDG MVSNIDLASG  240
DSIKDPLFDF NFADLQIPDM GFFMEEPLVA GAHGQELDFD CFLMDDSEQL PDDFCLLDQF  300
NVGFEGGGGP SELPDFDFAD CDFELSDSKY TFSDQLAPLN IACP
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00217DAPTransfer from AT1G68550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010551273.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010551273.10.0PREDICTED: ethylene-responsive transcription factor ERF118
SwissprotQ9CA271e-87EF118_ARATH; Ethylene-responsive transcription factor ERF118
TrEMBLR0GF664e-91R0GF66_9BRAS; Uncharacterized protein
STRINGXP_010551273.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25372671
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.24e-88ERF family protein
Publications ? help Back to Top
  1. Tran MK,Schultz CJ,Baumann U
    Conserved upstream open reading frames in higher plants.
    BMC Genomics, 2008. 9: p. 361
    [PMID:18667093]