PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010551287.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

bZIP

Protein Properties

Length: 455aa MW: 50323.4 Da PI: 5.7697

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010551287.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.5	8e-10	167	206	5	41
CHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLee...kvkeLeae 41 k rr+++NReAAr+sR+RKka++++Le + ++Le+e XP_010551287.1 167 KTLRRLAQNREAARKSRLRKKAYVQQLESsrlRLAQLEEE 206 788*************************833344444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	3.5E-7	160	209	No hit	No description
SMART	SM00338	8.1E-7	163	221	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.473	165	209	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.89E-6	167	209	No hit	No description
Pfam	PF00170	1.6E-6	167	206	IPR004827	Basic-leucine zipper domain
CDD	cd14708	1.46E-21	167	215	No hit	No description
PROSITE pattern	PS00036	0	170	185	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	5.4E-28	252	325	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009909	Biological Process	regulation of flower development
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 455 aa Download sequence Send to blast
MQSSFKATPF SPDFYCQSSF FYRGSGGLEE IHQPTAGFHH DGAVDLSPTP ADVTVACTNL 60 HYATFDTVLE RFEGEAGCLD TGQLVFQGGT TTGAVAAAAA ASVNGHCGNT MENWCDSVSA 120 MADNSQHTDT STDIDTDDKT QLNGVQQGTL FATASTDQHK AKSGDQKTLR RLAQNREAAR 180 KSRLRKKAYV QQLESSRLRL AQLEEELKRA RQQGFVVENG VSEDHTLQVS GNGTFAFELE 240 YARWVDEHQR LINDLRSAVN LQMGDNELRV LVDAVMAHYD EIFRLKGIGS KVDVFHMLSG 300 MWTTPAERFF MWLGGFRSSE LLRILGNNLD PLTEQQLTGI CNLQQSSLQA EEALSQGMEA 360 LQQTLLETLS SSSSSNGLNS PANVADYMGQ MAIAMGRLAS LENFLRQADL LRQQTLQQLY 420 RILTTRQAAR AFLVIHDYVS RLRALSSLWL ARPKC

Sequence ? help Back to Top

Protein Sequence Length: 455 aa Download sequence Send to blast

MQSSFKATPF SPDFYCQSSF FYRGSGGLEE IHQPTAGFHH DGAVDLSPTP ADVTVACTNL  60
HYATFDTVLE RFEGEAGCLD TGQLVFQGGT TTGAVAAAAA ASVNGHCGNT MENWCDSVSA  120
MADNSQHTDT STDIDTDDKT QLNGVQQGTL FATASTDQHK AKSGDQKTLR RLAQNREAAR  180
KSRLRKKAYV QQLESSRLRL AQLEEELKRA RQQGFVVENG VSEDHTLQVS GNGTFAFELE  240
YARWVDEHQR LINDLRSAVN LQMGDNELRV LVDAVMAHYD EIFRLKGIGS KVDVFHMLSG  300
MWTTPAERFF MWLGGFRSSE LLRILGNNLD PLTEQQLTGI CNLQQSSLQA EEALSQGMEA  360
LQQTLLETLS SSSSSNGLNS PANVADYMGQ MAIAMGRLAS LENFLRQADL LRQQTLQQLY  420
RILTTRQAAR AFLVIHDYVS RLRALSSLWL ARPKC

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in the determination of floral organ number. Acts to determine floral organ patterning by establishing floral organ primordia in specific numbers and positions. Plays a role in regulating stem cell fate by directly controlling AG expression. Binds to the 5'-AAGAAT-3' cis-acting element found in AG promoter. Might represent a target for a post-translational modification by GRXC7/ROXY1. {ECO:0000269\|PubMed:19395638, ECO:0000269\|PubMed:19395639, ECO:0000269\|PubMed:9990857}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010551287.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010551287.1	0.0	PREDICTED: transcription factor PERIANTHIA isoform X2
Swissprot	Q9SX27	0.0	PAN_ARATH; Transcription factor PERIANTHIA
TrEMBL	V4MB25	0.0	V4MB25_EUTSA; Uncharacterized protein
STRING	XP_010551286.1	0.0	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68640.1	0.0	bZIP family protein

Publications ? help Back to Top
Maier AT,Stehling-Sun S,Offenburger SL,Lohmann JU The bZIP Transcription Factor PERIANTHIA: A Multifunctional Hub for Meristem Control. Front Plant Sci, 2011. 2: p. 79 [PMID:22645551] Chandler JW,Werr W Arabidopsis floral phytomer development: auxin response relative to biphasic modes of organ initiation. J. Exp. Bot., 2014. 65(12): p. 3097-110 [PMID:24744428] Wynn AN,Seaman AA,Jones AL,Franks RG Novel functional roles for PERIANTHIA and SEUSS during floral organ identity specification, floral meristem termination, and gynoecial development. Front Plant Sci, 2014. 5: p. 130 [PMID:24778638] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] de Luis Balaguer MA, et al. Predicting gene regulatory networks by combining spatial and temporal gene expression data in Arabidopsis root stem cells. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(36): p. E7632-E7640 [PMID:28827319]