PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010551359.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MIKC_MADS
Protein Properties Length: 264aa    MW: 30824.2 Da    PI: 8.6058
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010551359.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.23.3e-31959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+nrqvtfskRr+g+lKKA+E+SvLCdaeva+i+fs++gkl+eys+
  XP_010551359.1  9 KRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYST 59
                    79***********************************************96 PP
2K-box107.81.2e-35791745100
           K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                     + ++ ++  + ++  e+++Lk++ie L+r+qRh+lGedL+s+slkeLq+LeqqL++slk+iRs+Kn+l+ e+i+elq+kek++qe+n +L+k+++
  XP_010551359.1  79 QLVAPDSDINGNWAMEYNRLKAKIELLERNQRHYLGEDLGSMSLKELQNLEQQLDTSLKHIRSRKNQLMSESINELQRKEKAIQEQNSMLSKQIK 173
                     555555666789*********************************************************************************98 PP

           K-box 100 e 100
                     e
  XP_010551359.1 174 E 174
                     7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.352161IPR002100Transcription factor, MADS-box
SMARTSM004329.2E-41160IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.81E-34285IPR002100Transcription factor, MADS-box
CDDcd002655.54E-42279No hitNo description
PRINTSPR004046.4E-31323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003198.7E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004046.4E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004046.4E-313859IPR002100Transcription factor, MADS-box
PfamPF014861.1E-3186172IPR002487Transcription factor, K-box
PROSITE profilePS5129717.41288178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009933Biological Processmeristem structural organization
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MGRGRVQLKR IENKINRQVT FSKRRAGLLK KAHEISVLCD AEVALIVFSH KGKLFEYSTD  60
SCMEKILERY ERYNYAERQL VAPDSDINGN WAMEYNRLKA KIELLERNQR HYLGEDLGSM  120
SLKELQNLEQ QLDTSLKHIR SRKNQLMSES INELQRKEKA IQEQNSMLSK QIKEREKVLK  180
AQQDHWEQQN HGRSFMPPQP LPVPPPPPPP SLPHHPHHPF MFPHDASPFL NMGGMYQEDP  240
TGMRRNDLDL TLEPIFDCNL GCFT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-22174173MEF2C
5f28_B2e-22174173MEF2C
5f28_C2e-22174173MEF2C
5f28_D2e-22174173MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes early floral meristem identity in synergy with LEAFY. Displays a redundant function with CAULIFLOWER in the up-regulation of LEAFY. Required subsequently for the transition of an inflorescence meristem into a floral meristem, and for the normal development of sepals and petals in flowers. Regulates positively B class homeotic proteins (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00096ChIP-seqTransfer from AT1G69120Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010551359.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010551359.10.0PREDICTED: floral homeotic protein APETALA 1-like
SwissprotP0DI141e-153AP1_BRARP; Floral homeotic protein APETALA 1
TrEMBLA0A0C5PW811e-157A0A0C5PW81_LEPSV; Apetala 1
STRINGXP_010551359.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79225110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.11e-141MIKC_MADS family protein