PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010551362.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family SBP
Protein Properties Length: 499aa    MW: 54787.7 Da    PI: 9.3079
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010551362.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.75.3e-41202277277
                     -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
             SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                     Cqv gC++dls+ keyhrrh+vCe+hsk pvv+v+g+eqrfCqqCsrfh+l+efDe+krsCrrrL +hnerrrk++
  XP_010551362.1 202 CQVFGCNMDLSSSKEYHRRHRVCEAHSKFPVVVVDGMEQRFCQQCSRFHKLTEFDERKRSCRRRLLGHNERRRKPS 277
                     **************************************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.7E-33198263IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.607199276IPR004333Transcription factor, SBP-box
SuperFamilySSF1036126.87E-39200279IPR004333Transcription factor, SBP-box
PfamPF031104.5E-32202275IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010468Biological Processregulation of gene expression
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MVPKTSKIIL LLLKSFPFPV PRSTEVSVPV IGCSQFQSLS SLMDTWNCSP DGKGALFANE  60
FDLSTDSSAR MRKFTPELNQ KLSSFMANGM FVSEFSDRGF SDMAPKQFHG KSIDFSGDST  120
RKIAASSLLA SNLLSEESYS CSKFPSFSSQ DCSGIDLTLR SHREHKNPSN DVFGNDALVI  180
ASSASPAKKP RAASSCLQRP LCQVFGCNMD LSSSKEYHRR HRVCEAHSKF PVVVVDGMEQ  240
RFCQQCSRFH KLTEFDERKR SCRRRLLGHN ERRRKPSVYL VPGKGHVVYR PSKGTKFLQT  300
SMAKHLSLDL PETFPGGLVY RVMDLQTHRV GRHVKFEDGY ANSPQTSIHP SNGQDSIPLS  360
EVTTVASASD WELQKVSGSS CALSLLSAQS SQHFSGTLSS SFSFAQANGD KGLRNGIGVH  420
TARAESTQND QMQSLVVNLG KNGQFLSGSG HGSCLSLGTG SSTVDLLQLS SHLQRVEQQR  480
SSNQANRHGY EGLPYFLGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-282012751084squamosa promoter binding protein-like 4
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1257274RKRSCRRRLLGHNERRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010551362.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010551362.10.0PREDICTED: squamosa promoter-binding-like protein 6 isoform X1
STRINGXP_010551362.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM92752435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69170.13e-64SBP family protein