PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010551363.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family SBP
Protein Properties Length: 470aa    MW: 51691.8 Da    PI: 8.9068
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010551363.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.84.8e-41173248277
                     -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
             SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                     Cqv gC++dls+ keyhrrh+vCe+hsk pvv+v+g+eqrfCqqCsrfh+l+efDe+krsCrrrL +hnerrrk++
  XP_010551363.1 173 CQVFGCNMDLSSSKEYHRRHRVCEAHSKFPVVVVDGMEQRFCQQCSRFHKLTEFDERKRSCRRRLLGHNERRRKPS 248
                     **************************************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.3E-33169234IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.607170247IPR004333Transcription factor, SBP-box
SuperFamilySSF1036126.28E-39171250IPR004333Transcription factor, SBP-box
PfamPF031104.1E-32173246IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010468Biological Processregulation of gene expression
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MGFFSEFQSL SSLMDTWNCS PDGKGALFAN EFDLSTDSSA RMRKFTPELN QKLSSFMANG  60
MFVSEFSDRG FSDMAPKQFH GKSIDFSGDS TRKIAASSLL ASNLLSEESY SCSKFPSFSS  120
QDCSGIDLTL RSHREHKNPS NDVFGNDALV IASSASPAKK PRAASSCLQR PLCQVFGCNM  180
DLSSSKEYHR RHRVCEAHSK FPVVVVDGME QRFCQQCSRF HKLTEFDERK RSCRRRLLGH  240
NERRRKPSVY LVPGKGHVVY RPSKGTKFLQ TSMAKHLSLD LPETFPGGLV YRVMDLQTHR  300
VGRHVKFEDG YANSPQTSIH PSNGQDSIPL SEVTTVASAS DWELQKVSGS SCALSLLSAQ  360
SSQHFSGTLS SSFSFAQANG DKGLRNGIGV HTARAESTQN DQMQSLVVNL GKNGQFLSGS  420
GHGSCLSLGT GSSTVDLLQL SSHLQRVEQQ RSSNQANRHG YEGLPYFLGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-281722461084squamosa promoter binding protein-like 4
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1228245RKRSCRRRLLGHNERRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010551363.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010551363.10.0PREDICTED: squamosa promoter-binding-like protein 6 isoform X2
STRINGXP_010551362.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69170.12e-64SBP family protein