PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010551364.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family SBP
Protein Properties Length: 457aa    MW: 50230.2 Da    PI: 9.0347
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010551364.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.94.6e-41160235277
                     -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
             SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                     Cqv gC++dls+ keyhrrh+vCe+hsk pvv+v+g+eqrfCqqCsrfh+l+efDe+krsCrrrL +hnerrrk++
  XP_010551364.1 160 CQVFGCNMDLSSSKEYHRRHRVCEAHSKFPVVVVDGMEQRFCQQCSRFHKLTEFDERKRSCRRRLLGHNERRRKPS 235
                     **************************************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.1E-33156221IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.607157234IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.98E-39158237IPR004333Transcription factor, SBP-box
PfamPF031103.9E-32160233IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010468Biological Processregulation of gene expression
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MDTWNCSPDG KGALFANEFD LSTDSSARMR KFTPELNQKL SSFMANGMFV SEFSDRGFSD  60
MAPKQFHGKS IDFSGDSTRK IAASSLLASN LLSEESYSCS KFPSFSSQDC SGIDLTLRSH  120
REHKNPSNDV FGNDALVIAS SASPAKKPRA ASSCLQRPLC QVFGCNMDLS SSKEYHRRHR  180
VCEAHSKFPV VVVDGMEQRF CQQCSRFHKL TEFDERKRSC RRRLLGHNER RRKPSVYLVP  240
GKGHVVYRPS KGTKFLQTSM AKHLSLDLPE TFPGGLVYRV MDLQTHRVGR HVKFEDGYAN  300
SPQTSIHPSN GQDSIPLSEV TTVASASDWE LQKVSGSSCA LSLLSAQSSQ HFSGTLSSSF  360
SFAQANGDKG LRNGIGVHTA RAESTQNDQM QSLVVNLGKN GQFLSGSGHG SCLSLGTGSS  420
TVDLLQLSSH LQRVEQQRSS NQANRHGYEG LPYFLGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-281592331084squamosa promoter binding protein-like 4
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1215232RKRSCRRRLLGHNERRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010551364.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010551362.10.0PREDICTED: squamosa promoter-binding-like protein 6 isoform X1
STRINGXP_010551362.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69170.11e-64SBP family protein