PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010551436.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family M-type_MADS
Protein Properties Length: 358aa    MW: 40355.5 Da    PI: 6.2455
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010551436.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF66.13.5e-211053245
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                    + en+  rq tf+kR++gi+KKA+ELS+LCd++v +++fs++gk
  XP_010551436.1 10 KLENTNGRQATFAKRKHGIMKKANELSILCDIDVVLLMFSPSGK 53
                    6799**************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.123153IPR002100Transcription factor, MADS-box
SMARTSM004322.7E-29160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.02E-24293IPR002100Transcription factor, MADS-box
CDDcd001205.57E-25254No hitNo description
PRINTSPR004043.1E-17323IPR002100Transcription factor, MADS-box
PfamPF003192.2E-191154IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-172338IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-173859IPR002100Transcription factor, MADS-box
Gene3DG3DSA:1.10.1660.107.7E-4118182No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MGRVKLKIKK LENTNGRQAT FAKRKHGIMK KANELSILCD IDVVLLMFSP SGKPSLCSRK  60
HSLEEVITKL AQLTPQERAK RKLESLEALK KTFMKLDHDV NISEFFGRSK STYEEVTNRA  120
KMLQMQLSEV HTRLSYWTEP EKIDSIDDLG QMENALRQSL DQVRAHKENM QQQQQQLIHL  180
DGKNEIQSEM PLSFGMDSEQ QFQPLSWVHN DGSMNISLQE DPSLLHHREM ACSASSSLGN  240
YSGLFGTSKS PDLSNSGIEN CVGSEFTGSC TDPNNLMMNS NNQYPSMAYN LSFLNDPKLQ  300
QLAEWNLLGS PADYYVSQIL EASRPQFNMD SGNWASSASV IPCSVSGYDD PLFSRQPN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010551436.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010551436.10.0PREDICTED: agamous-like MADS-box protein AGL30 isoform X2
SwissprotQ1PFA41e-102AGL30_ARATH; Agamous-like MADS-box protein AGL30
TrEMBLA0A0D3CZA51e-139A0A0D3CZA5_BRAOL; Uncharacterized protein
STRINGXP_010551435.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69540.11e-128AGAMOUS-like 94
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]