PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010551440.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family G2-like
Protein Properties Length: 305aa    MW: 33995.2 Da    PI: 6.5905
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010551440.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like99.22.9e-312074155
         G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                    kprl+Wt+eLH+ Fveav qLGG+ekAtPk ++++m+++gLtl+h+kSHLQkYRl
  XP_010551440.1 20 KPRLKWTSELHHMFVEAVCQLGGPEKATPKGLMKVMGIPGLTLYHLKSHLQKYRL 74
                    79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-281876IPR009057Homeodomain-like
SuperFamilySSF466898.42E-161975IPR009057Homeodomain-like
TIGRFAMsTIGR015572.3E-222075IPR006447Myb domain, plants
PfamPF002495.4E-62273IPR001005SANT/Myb domain
PfamPF143791.8E-23124170IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MAMESDQRAS MNLVLSTDAK PRLKWTSELH HMFVEAVCQL GGPEKATPKG LMKVMGIPGL  60
TLYHLKSHLQ KYRLGKSQQP DGSCVVDNKQ EAVASSSEEE RLVQSSGNDH ENVKGSEIHD  120
ESKQMADALQ MQMEVQKKLH EQIEVQRHLQ VRIEAQGKYL QSVLEKARET LAGYTSSNLG  180
LDFARAELSK LASMVNRGCP SSSFSDITEA EGEGERGFLD HKKPENAGSQ TRCSAESSMT  240
SSESTDTKSD NYEIVTRRSI ELPLMETKPE ALNRKKRTLN DDAHVEQPPR GKRAFEGEHL  300
RLSLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-201978160Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-201978160Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A3e-202076157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-202076157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-202076157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-202076157Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-201978160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-201978160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-201978160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-201978160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-201978160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-201978160Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010551440.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010551440.10.0PREDICTED: myb family transcription factor PHL8 isoform X1
SwissprotF4I2741e-117PHL8_ARATH; Myb family transcription factor PHL8
TrEMBLA0A087HGY01e-115A0A087HGY0_ARAAL; Uncharacterized protein
STRINGXP_010551440.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38782759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69580.11e-116G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]