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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | XP_010551499.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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| Family | HB-other | ||||||||
| Protein Properties | Length: 221aa MW: 24842.9 Da PI: 7.5019 | ||||||||
| Description | HB-other family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Homeobox | 40.6 | 4.4e-13 | 41 | 96 | 2 | 56 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56
+kR++++k l +Lee+F +++++++ eL++kl+++ r V WF rRa +k
XP_010551499.1 41 SKRWSPSKADLLILEEAFSAnVGKIKTDTKNELSEKLKIPPRAVALWFTKRRAEHK 96
69*****************8688******************************998 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF46689 | 2.74E-10 | 20 | 99 | IPR009057 | Homeodomain-like |
| PROSITE profile | PS50071 | 10.867 | 37 | 98 | IPR001356 | Homeobox domain |
| SMART | SM00389 | 3.3E-6 | 39 | 102 | IPR001356 | Homeobox domain |
| Pfam | PF00046 | 2.0E-10 | 41 | 96 | IPR001356 | Homeobox domain |
| CDD | cd00086 | 7.53E-7 | 42 | 99 | No hit | No description |
| Gene3D | G3DSA:1.10.10.60 | 1.7E-9 | 42 | 103 | IPR009057 | Homeodomain-like |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 221 aa Download sequence Send to blast |
MEFRPSLPRV HPSVRIPISS SSRLSVTSER DTIHAAQKPH SKRWSPSKAD LLILEEAFSA 60 NVGKIKTDTK NELSEKLKIP PRAVALWFTK RRAEHKSEKL EEKSVVSRAR YLNCMAYLDR 120 LSKRNETLMQ IPVAATNGTL ITLDEDTTKA NGSKLLQLVD PRNLYCVGRT GETASESYEE 180 ANSSANWGSA DEYDCFRGLG NIVEEGDSYT TNSYPFPELE F |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | XP_010551499.1 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_010551499.1 | 1e-164 | PREDICTED: uncharacterized protein LOC104822094 | ||||
| STRING | XP_010551499.1 | 1e-163 | (Tarenaya hassleriana) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G40060.1 | 3e-08 | homeobox protein 16 | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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