PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010551513.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family WRKY
Protein Properties Length: 426aa    MW: 47436.6 Da    PI: 8.0323
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010551513.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.95.6e-30200259159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     ++Dg++WrKYGqK+ kg++ pr+YYrCt++ +Cpv+k+v+rsaed ++ ++tYeg+H+h+
  XP_010551513.1 200 VNDGCQWRKYGQKTAKGNPRPRAYYRCTMSpSCPVRKQVQRSAEDASISIMTYEGNHDHP 259
                     58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.7E-30186261IPR003657WRKY domain
SuperFamilySSF1182901.22E-25195261IPR003657WRKY domain
SMARTSM007749.6E-34200260IPR003657WRKY domain
PfamPF031065.6E-26201259IPR003657WRKY domain
PROSITE profilePS5081127.657201261IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MIKDENNSCI RLGGSEKEEE LESARAKVGE VREENKRLKL LLSKILSDYN SLQTHVIGLL  60
GQEREEASGK QLQELEAKYD HNHVDISLCL GSDSDKSKDR ECRNKNMVQA KERSEEKLEL  120
GLGFGANDRH VIRKRDESAL NDPDDEKGEN LSPSRKVLKT MTSEDHHQDR EKVFEQHQEQ  180
ELGLKRTRVC VRARCEGPSV NDGCQWRKYG QKTAKGNPRP RAYYRCTMSP SCPVRKQVQR  240
SAEDASISIM TYEGNHDHPL PMAATAMASA TSAAASFLQS HSSSTSLNSG HSYFFPSQNL  300
SISTSNSHPT VTLDLTRPNP NKKLPNYPLP SYPSSPASLN FSSFDPMDRR TYIDTSSFNG  360
FPLNRSQASS SSTEAITRLI TSNPNIRTAL AEAFVSSRFG RNTSPVASLP FSSVSSSSVF  420
ETDHNK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-21187261174WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010551513.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010551513.10.0PREDICTED: probable WRKY transcription factor 36
SwissprotQ9CAR48e-89WRK36_ARATH; Probable WRKY transcription factor 36
TrEMBLD7KXJ92e-92D7KXJ9_ARALL; WRKY DNA-binding protein 36
STRINGXP_010551513.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139131825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69810.13e-64WRKY DNA-binding protein 36
Publications ? help Back to Top
  1. Yang Y, et al.
    UVR8 interacts with WRKY36 to regulate HY5 transcription and hypocotyl elongation in Arabidopsis.
    Nat Plants, 2018. 4(2): p. 98-107
    [PMID:29379156]