PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010551545.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

ZF-HD

Protein Properties

Length: 201aa MW: 22353 Da PI: 8.9945

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010551545.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	39	1.9e-12	6	30	33	57
ZF-HD_dimer 33 geegtaaalkCaACgCHRnFHRrev 57 +e+++++l C ACgCHRnFHRr + XP_010551545.1 6 AKETDPSSLLCVACGCHRNFHRRYN 30 34599*****************976 PP
2	Homeobox	20.8	6.8e-07	116	175	1	56
TT--SS--HHHHHHHHHHHH.....HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFe.....knrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +r+Rt+ft+eq e + +F+ + r ++++ + +k g++ ++ kvWF+N ++k + XP_010551545.1 116 KRSRTKFTEEQKEKMR-VFAeesdwMIRSCDETTLDDFCRKSGISRNVLKVWFHNNKYKFR 175 79**********95.6774555556889999999999999***************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	4.0E-6	1	28	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51257	5	1	21	No hit	No description
Pfam	PF04770	4.6E-9	5	29	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	1.07E-17	107	175	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.5E-24	107	176	IPR009057	Homeodomain-like
PROSITE profile	PS50071	9.539	113	177	IPR001356	Homeobox domain
CDD	cd00086	5.07E-5	116	178	No hit	No description
Pfam	PF00046	9.7E-5	116	175	IPR001356	Homeobox domain
TIGRFAMs	TIGR01565	2.6E-21	116	172	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MASPAAKETD PSSLLCVACG CHRNFHRRYN PSEFLFTTPT PSPENHAPPP PSSPPPTYVA 60 SPVPRSFYAS GPHMLYNFSS GGVLRRPPDF NMNDEVKIQA VAVRSENSGL RTGQVKRSRT 120 KFTEEQKEKM RVFAEESDWM IRSCDETTLD DFCRKSGISR NVLKVWFHNN KYKFRGHRIS 180 DLNGGSDNVG AHVSGDGSSA S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	7e-16	116	171	18	73	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the up-regulation of several stress-inducible genes. Acts as a transcriptional activator by interacting with MED25 and NAC proteins. Involved in increased drought tolerance. {ECO:0000269\|PubMed:16428600, ECO:0000269\|PubMed:17233795}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010551545.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by abscisic acid and by drought and salt stress. Not induced by cold. {ECO:0000269\|PubMed:17233795}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010551545.1	1e-150	PREDICTED: zinc-finger homeodomain protein 11
Swissprot	Q9SEZ1	2e-46	ZHD11_ARATH; Zinc-finger homeodomain protein 11
TrEMBL	D7KXH2	8e-45	D7KXH2_ARALL; ATHB29/ZFHD1
STRING	XP_010551545.1	1e-149	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5166	25	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69600.1	2e-40	zinc finger homeodomain 1

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]