PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010551691.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ERF
Protein Properties Length: 148aa    MW: 17099.8 Da    PI: 9.6071
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010551691.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP268.99e-221970256
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                    +y+GVr+++ +g+++AeIrdps ng  +r +lg+f+taeeAa+a+++a+ +l+g+
  XP_010551691.1 19 RYRGVRRRP-WGKYAAEIRDPSRNG--ARLWLGTFDTAEEAARAYDRAAFNLRGH 70
                    6********.**********98887..**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381234.0E-252137IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000186.28E-271878No hitNo description
Gene3DG3DSA:3.30.730.105.0E-321979IPR001471AP2/ERF domain
SMARTSM003808.7E-381983IPR001471AP2/ERF domain
PfamPF008479.9E-161970IPR001471AP2/ERF domain
PROSITE profilePS5103225.1321977IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-241978IPR016177DNA-binding domain
PRINTSPR003677.6E-122031IPR001471AP2/ERF domain
PRINTSPR003677.6E-124359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MEGSSKRASS DQQEDRQARY RGVRRRPWGK YAAEIRDPSR NGARLWLGTF DTAEEAARAY  60
DRAAFNLRGH LAILNFPNEY YSRVPDFSPR PSSFPPPPPS SKSFSSSYIP STSSGGSRQN  120
EREVFEFEYL DDRVLEELLE TEERKKRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-321713412114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010551691.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010551691.11e-103PREDICTED: ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC51e-61ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLR0HQU33e-63R0HQU3_9BRAS; Uncharacterized protein
STRINGXP_010551691.11e-102(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.11e-39ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]